YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376005, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376005, gi|....

Description	E-value	Query Range	Subject Range
gi\|207088581 - gi\|207088581\|gb\|EDZ65853.1\| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani AFC27] gi\|254435470, gi... - gi\|254435470\|ref\|ZP_05048977.1\| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani AF... gi\|77166275, gi\|... - gi\|77166275\|ref\|YP_344800.1\| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC 19707], ...	180.0	[0..1]	[151..1]
gi\|34499838, gi\|... - gi\|34499838\|ref\|NP_904053.1\| RNA methyltransferase [Chromobacterium violaceum ATCC 12472], gi\|341056...	178.0	[0..1]	[154..1]
gi\|254671569 - gi\|254671569\|emb\|CBA09217.1\| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis alpha1... gi\|11354139 - pir\|\|E81218 RNA methyltransferase, TrmH family NMB0268 [imported] - Neisseria meningitidis (strain M... gi\|15676192, gi\|... - gi\|7225492\|gb\|AAF40722.1\| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58], gi\|15676... gi\|225106955, gi... - gi\|225106955\|ref\|ZP_03721091.1\| hypothetical protein NEILACOT_00370 [Neisseria lactamica ATCC 23970]...	177.0	[0..1]	[154..1]
gi\|120865844, gi... - gi\|121634138\|ref\|YP_974383.1\| putative tRNA/rRNA methyltransferase [Neisseria meningitidis FAM18], g... gi\|254674132 - gi\|254674132\|emb\|CBA09916.1\| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis serogr... gi\|11354111 - pir\|\|E81795 probable tRNA/rRNA methyltransferase NMA2218 [imported] - Neisseria meningitidis (strain... gi\|7380837, gi\|1... - gi\|7380837\|emb\|CAB85429.1\| putative tRNA/rRNA methyltransferase [Neisseria meningitidis Z2491], gi\|2...	176.0	[0..1]	[154..1]
gi\|239999819 - gi\|239999819\|ref\|ZP_04719743.1\| SpoU [Neisseria gonorrhoeae 35/02] gi\|193934910, gi... - gi\|194099620\|ref\|YP_002002751.1\| SpoU [Neisseria gonorrhoeae NCCP11945], gi\|193934910\|gb\|ACF30734.1\|... gi\|240113844 - gi\|240113844\|ref\|ZP_04728334.1\| SpoU [Neisseria gonorrhoeae MS11] gi\|240081565 - gi\|240081565\|ref\|ZP_04726108.1\| SpoU [Neisseria gonorrhoeae FA19] gi\|240017423 - gi\|240017423\|ref\|ZP_04723963.1\| SpoU [Neisseria gonorrhoeae FA6140] gi\|240014975 - gi\|240014975\|ref\|ZP_04721888.1\| SpoU [Neisseria gonorrhoeae DGI18] gi\|240126553 - gi\|240126553\|ref\|ZP_04739439.1\| SpoU [Neisseria gonorrhoeae SK-92-679] gi\|240124341 - gi\|240124341\|ref\|ZP_04737297.1\| SpoU [Neisseria gonorrhoeae PID332] gi\|240122044 - gi\|240122044\|ref\|ZP_04735006.1\| SpoU [Neisseria gonorrhoeae PID24-1] gi\|240116578 - gi\|240116578\|ref\|ZP_04730640.1\| SpoU [Neisseria gonorrhoeae PID18] gi\|226513641, gi... - gi\|254494601\|ref\|ZP_05107772.1\| RNA methyltransferase [Neisseria gonorrhoeae 1291], gi\|226513641\|gb\|... gi\|240129015 - gi\|240129015\|ref\|ZP_04741676.1\| SpoU [Neisseria gonorrhoeae SK-93-1035] gi\|59718943, gi\|... - gi\|59802048\|ref\|YP_208760.1\| hypothetical protein NGO1727 [Neisseria gonorrhoeae FA 1090], gi\|597189...	176.0	[0..1]	[154..1]
gi\|88858423, gi\|... - gi\|88858423\|ref\|ZP_01133065.1\| putative tRNA/rRNA methyltransferase [Pseudoalteromonas tunicata D2],...	176.0	[0..1]	[154..1]
gi\|95108650, gi\|... - gi\|95108650\|emb\|CAK13344.1\| putative RNA methyltransferase, TrmH family, group 2 [Pseudomonas entomo... gi\|95108650 - gi\|95108650\|emb\|CAK13344.1\| putative RNA methyltransferase, TrmH family, group 2 [Pseudomonas entomo...	175.0	[0..1]	[153..1]
gi\|120325922, gi... - gi\|77952029\|ref\|ZP_00816447.1\| RNA methyltransferase TrmH, group 2 [Marinobacter aquaeolei VT8], gi\|...	175.0	[0..1]	[154..1]
gi\|24986832, gi\|... - gi\|26991728\|ref\|NP_747153.1\| RNA methyltransferase [Pseudomonas putida KT2440], gi\|24986832\|gb\|AAN70...	174.0	[0..1]	[153..5]
gi\|49613761, gi\|... - gi\|50123235\|ref\|YP_052402.1\| putative RNA-methyltransferase [Pectobacterium atrosepticum SCRI1043], ...	174.0	[0..1]	[150..1]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHIALYEPE IAPNTGNIIR LCANNGSQLH LIEPLGFDFE EKKLRRAGLD YADLTNVTRH  60
   61 KNFDAFLKAM AGKRIMACTT KGSRPHSELS FAKDDVLLFG PETRGLPMSI IESIPTEQRL 120
  121 RIPMAATSRS LNLSNAVAII SYEAWRQLGF EGAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	1j85A
Description:	Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA methyltransferase activity	4.77771076540343	bayes_pls_golite062009
methyltransferase activity	4.0901595540349	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01958090893547	bayes_pls_golite062009
rRNA methyltransferase activity	3.659149846946	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.59156540645412	bayes_pls_golite062009
tRNA methyltransferase activity	2.52700462137917	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	2.29844424181442	bayes_pls_golite062009
tRNA (guanine-N1-)-methyltransferase activity	2.0947794364355	bayes_pls_golite062009
transferase activity	1.84002196534744	bayes_pls_golite062009
catalytic activity	1.16774040077235	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	0.47764353619615	bayes_pls_golite062009
N-methyltransferase activity	0.0655574594365502	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: