YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350997, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350997, gi|....

Description	E-value	Query Range	Subject Range
gi\|52786002, gi\|... - gi\|52786002\|ref\|YP_091831.1\| YocS [Bacillus licheniformis ATCC 14580], gi\|52348504\|gb\|AAU41138.1\| Yo...	234.0	[0..2]	[303..9]
BASS1_ARATH - Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 ...	232.0	[0..8]	[305..101]
YOCS_BACSU - Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis GN=yocS PE=3 SV=1 gi\|221319079 - gi\|221319079\|ref\|ZP_03600373.1\| hypothetical protein BsubsJ_10528 [Bacillus subtilis subsp. subtilis... gi\|221314156 - gi\|221314156\|ref\|ZP_03595961.1\| hypothetical protein BsubsN3_10607 [Bacillus subtilis subsp. subtili... YOCS_BACSU - Uncharacterized sodium-dependent transporter YocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=... gi\|221323353 - gi\|221323353\|ref\|ZP_03604647.1\| hypothetical protein BsubsS_10647 [Bacillus subtilis subsp. subtilis...	227.0	[0..3]	[304..10]
gi\|85666627 - gi\|85666627\|ref\|ZP_01028851.1\| hypothetical protein Badol_01001474 [Bifidobacterium adolescentis] gi\|119025546, gi... - gi\|119025546\|ref\|YP_909391.1\| Na+ dependent nucleoside transporter [Bifidobacterium adolescentis ATC...	225.0	[0..3]	[302..10]
gi\|50086535, gi\|... - gi\|50086535\|ref\|YP_048045.1\| putative transporter; putative sodium/bile acid transporter family prot...	224.0	[0..2]	[305..21]
gi\|71155563, gi\|... - gi\|71368737\|ref\|ZP_00659224.1\| Arsenical-resistance protein ACR3 [Nocardioides sp. JS614], gi\|711555...	224.0	[0..1]	[299..238]
gi\|45358216, gi\|... - gi\|45358216\|ref\|NP_987773.1\| bile acid:sodium symporter [Methanococcus maripaludis S2], gi\|44920973\|...	223.0	[0..2]	[304..17]
gi\|33566456 - gi\|33566456\|emb\|CAE37709.1\| putative transmembrane transport protein [Bordetella parapertussis] gi\|33597005 - gi\|33597005\|ref\|NP_884648.1\| putative transmembrane transport protein [Bordetella parapertussis 1282... gi\|33600847, gi\|... - gi\|33600847\|ref\|NP_888407.1\| putative transmembrane transport protein [Bordetella bronchiseptica RB5...	222.0	[0..3]	[303..38]
gi\|218188749 - gi\|218188749\|gb\|EEC71176.1\| hypothetical protein OsI_03049 [Oryza sativa Indica Group] BASS2_ORYSJ - Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS...	222.0	[0..2]	[299..108]
gi\|51457946 - gi\|51457946\|gb\|AAU03362.1\| putative anion:sodium symporter [Lycopersicon esculentum]	220.0	[0..4]	[298..99]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNVNRLFPL FALLGAVTAY LMPAWFVVFK NSIVPLLVVI MLSMGLTLDL QDFANAFKQK  60
   61 RAVITGLILQ FTLMPLSALA ISLLLGLDRE LTIGMVLVGS VAGGTASNVI CYLAKGDVAL 120
  121 SITMTALSTL AGVVLTPLII QLLIGEMVAI PLMDMLLSLV KIVLIPVTVG VVLNHFFKPQ 180
  181 VAKLSPALPL ISIVAIVMAI SIIVAL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.124939
Match:	PF01758.7
Description:	No description for PF01758.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [207-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAGQFAQVGP VILLAVFLHN GLGLTLGYLC CRLLGFSHTV CKTISIEVGL QNSGLATALC  60
   61 IKFFSPISAI PSAIFSIWHN LSGAMLAGYW ASRVQKQTEA LE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits