YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350774, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	454 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350774, gi|....

Description	E-value	Query Range	Subject Range
gi\|50728992 - gi\|50728992\|ref\|XP_416378.1\| PREDICTED: similar to solute carrier family 6 (neurotransmitter transpo...	437.0	[0..8]	[454..130]
gi\|73988924 - gi\|73988924\|ref\|XP_854917.1\| PREDICTED: similar to Sodium- and chloride-dependent glycine transporte...	435.0	[0..2]	[453..291]
S6A13_MOUSE - Sodium- and chloride-dependent GABA transporter 2 OS=Mus musculus GN=Slc6a13 PE=1 SV=1	433.0	[0..1]	[454..24]
S6A13_RAT - Sodium- and chloride-dependent GABA transporter 2 OS=Rattus norvegicus GN=Slc6a13 PE=1 SV=1	430.0	[0..1]	[454..24]
SerT-PA, FBpp0309974 - The gene Serotonin transporter is referred to in FlyBase by the symbol Dmel\SerT (CG4545, FBgn001041... gi\|220947858 - gi\|220947858\|gb\|ACL86472.1\| SerT-PA [synthetic construct]	430.0	[0..3]	[453..68]
gi\|91094247 - gi\|91094247\|ref\|XP_968717.1\| PREDICTED: similar to high-affinity serotonin transporter [Tribolium ca...	426.0	[0..1]	[454..47]
gi\|66548818 - gi\|66548818\|ref\|XP_395197.2\| PREDICTED: similar to inebriated CG15444-PB, isoform B [Apis mellifera]	426.0	[0..7]	[454..298]

Back

Predicted Domain #1

Region A:
Residues: [1-454]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSANTNSTN HFSSRLGFIM AAAGSAVGVG NIWGFPTQAA THGGGAFLLV YLVLIFILGI  60
   61 PMLMAELMIG RHGQTNPADA MGKLGCNSLT RSLGKTIGLI SIVTAGLIYT FYSILSGWFV 120
  121 SFAIAPIATA FGSNDTAAWL MDFSLSRNLV FTLIFSTLVF LVLLQGVQEG IEKWSKRLMP 180
  181 LLLIMLIAGV AYIFSLNGAS EGISALLTPN FAKAIAPDTL INALGQTFFS LTIGTGAMMV 240
  241 YGSYLSQKEN IAKLTVWVAF TDSGIAFLAA FLIIPAMYVA QHNGVQIFSP EGKLIDSDAL 300
  301 VFTVLPALFS TLGDTANLII SVVFFMLLII AGLTSAISIA EVPTSYVMQK CGFSRQRATL 360
  361 IIGLLLTALS LLLAVFFETL FSFTIMLTTQ MTQPLVALGI AIYLGWIWRQ SQLLKAISKQ 420
  421 EGVDATGLFW RIWPRYVKYV CPVLIIAIAI RQFV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.0
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits