YRC Public Data Repository - Protein Structure Prediction

Protein:	LEUD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEUD_SHEON.

Description	E-value	Query Range	Subject Range
LEUD_PHOPR - 3-isopropylmalate dehydratase small subunit OS=Photobacterium profundum GN=leuD PE=3 SV=1 LEUD_PHOPR - 3-isopropylmalate dehydratase small subunit OS=Photobacterium profundum (strain SS9) GN=leuD PE=3 SV...	258.0	[0..1]	[200..1]
LEUD_RALSO - 3-isopropylmalate dehydratase small subunit OS=Ralstonia solanacearum (strain GMI1000) GN=leuD PE=3 ... LEUD_RALSO - 3-isopropylmalate dehydratase small subunit OS=Ralstonia solanacearum GN=leuD PE=3 SV=1	258.0	[0..1]	[199..1]
gi\|28971658 - gi\|28971658\|dbj\|BAC65258.1\| 3-isopropylmalate dehydratase small subunit [Burkholderia multivorans] LEUD_BURM1 - 3-isopropylmalate dehydratase small subunit OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN...	257.0	[0..1]	[199..1]
gi\|168243477, gi... - gi\|205337440\|gb\|EDZ24204.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica subsp.... LEUD1_SALTY - 3-isopropylmalate dehydratase small subunit 1 OS=Salmonella typhimurium GN=leuD1 PE=1 SV=1 gi\|205331577, gi... - gi\|205331577\|gb\|EDZ18341.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica subsp.... LEUD1_SALTY - 3-isopropylmalate dehydratase small subunit 1 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATC... gi\|197240220, gi... - gi\|197261965\|ref\|ZP_03162039.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica su... gi\|197212139, gi... - gi\|197248436\|ref\|YP_002145096.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica s... gi\|194408815, gi... - gi\|194450511\|ref\|YP_002044080.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp.... gi\|205342455, gi... - gi\|205342455\|gb\|EDZ29219.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica subsp.... LED1_SALTY, LEUD... - 3-isopropylmalate dehydratase small subunit 1 OS=Salmonella typhimurium GN=leuD1 PE=3 SV=1, (P04787)... gi\|204927076, gi... - gi\|204927076\|ref\|ZP_03218278.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica su... lcl\|NC_016856.1_... - [gene=leuD] [protein=isopropylmalate isomerase small subunit] [protein_id=YP_005235764.1] [location=...	256.0	[0..2]	[201..3]
LEUD_BURA4 - 3-isopropylmalate dehydratase small subunit OS=Burkholderia ambifaria (strain MC40-6) GN=leuD PE=3 S... gi\|170701953, gi... - gi\|170701953\|ref\|ZP_02892876.1\| 3-isopropylmalate dehydratase, small subunit [Burkholderia ambifaria... LEUD_BURCM - 3-isopropylmalate dehydratase small subunit OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) G...	256.0	[0..1]	[199..1]
gi\|213647307 - gi\|213647307\|ref\|ZP_03377360.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp. ... gi\|213855544 - gi\|213855544\|ref\|ZP_03383784.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp. ... LEUD_SALTI - 3-isopropylmalate dehydratase small subunit OS=Salmonella typhi GN=leuD PE=3 SV=1 gi\|213973614 - gi\|213973614\|ref\|ZP_03400873.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp. ... gi\|214001229 - gi\|214001229\|ref\|ZP_03411964.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp. ... gi\|213023029 - gi\|213023029\|ref\|ZP_03337476.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp. ... gi\|213161516 - gi\|213161516\|ref\|ZP_03347226.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp. ... gi\|213427554 - gi\|213427554\|ref\|ZP_03360304.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp. ... LEUD_SALPA - 3-isopropylmalate dehydratase small subunit OS=Salmonella paratyphi A GN=leuD PE=3 SV=1 gi\|213584910 - gi\|213584910\|ref\|ZP_03366736.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp. ... LEUD_SALPK - 3-isopropylmalate dehydratase small subunit OS=Salmonella paratyphi A (strain AKU_12601) GN=leuD PE=... gi\|29140655, gi\|... - gi\|29140655\|ref\|NP_803997.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp. ent... gi\|16759105 - gi\|16759105\|ref\|NP_454722.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp. ent... LEUD_SALTI - 3-isopropylmalate dehydratase small subunit OS=Salmonella typhi GN=leuD PE=3 SV=1 LEUD_SALPA - 3-isopropylmalate dehydratase small subunit OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN...	255.0	[0..2]	[201..3]
gi\|78062979, gi\|... - gi\|78062979\|ref\|YP_372887.1\| isopropylmalate isomerase small subunit [Burkholderia sp. 383], gi\|7797...	255.0	[0..1]	[199..1]
LEUD_PSEAB - 3-isopropylmalate dehydratase small subunit OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=leuD PE...	255.0	[0..1]	[201..1]
LEUD_VIBPA - 3-isopropylmalate dehydratase small subunit OS=Vibrio parahaemolyticus GN=leuD PE=3 SV=1 LEUD_VIBPA - 3-isopropylmalate dehydratase small subunit OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2...	255.0	[0..1]	[201..1]
LEUD_PSEAE - 3-isopropylmalate dehydratase small subunit OS=Pseudomonas aeruginosa GN=leuD PE=3 SV=1 LEUD_PSEA8 - 3-isopropylmalate dehydratase small subunit OS=Pseudomonas aeruginosa (strain LESB58) GN=leuD PE=3 S... LEUD_PSEAE - 3-isopropylmalate dehydratase small subunit OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C... gi\|194552800, gi... - gi\|84326203\|ref\|ZP_00974232.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Pseudomonas aer... gi\|84320119, gi\|... - gi\|84320119\|ref\|ZP_00968504.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Pseudomonas aer... gi\|107102669 - gi\|107102669\|ref\|ZP_01366587.1\| hypothetical protein PaerPA_01003734 [Pseudomonas aeruginosa PACS2]	255.0	[0..1]	[201..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPFTCHTGL AVMIDSANID TDQIIPKQFL SKVTRDGFGV HLFHDWRYLD DAGDVPNPEF  60
   61 TLNKPRYNGA SILLAQENFG CGSSREHAPW ALADFGLRAI IAPSFADIFY GNSINNGLLP 120
  121 VKLSANEVRQ LMDEVASEEG AQITVDLTTC QVTSPSGAQF SFSLAESARH KLLNGLDAIG 180
  181 LTLSHGAQIS EYESQIPSWR R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.0
Match:	2hcuA
Description:	No description for 2hcuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits