YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350557, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	392 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350557, gi|....

Description	E-value	Query Range	Subject Range
FLIB_SALCH - Lysine-N-methylase OS=Salmonella choleraesuis (strain SC-B67) GN=fliB PE=3 SV=1 FLIB_SALCH - Lysine-N-methylase OS=Salmonella choleraesuis GN=fliB PE=3 SV=1 FLIB_SALCH - Lysine-N-methylase OS=Salmonella choleraesuis GN=fliB PE=3 SV=1	532.0	[0..1]	[389..1]
gi\|167993529, gi... - gi\|205328431\|gb\|EDZ15195.1\| lysine-N-methylase [Salmonella enterica subsp. enterica serovar 4,[5],12... FLIB_SALTY - Lysine-N-methylase OS=Salmonella typhimurium GN=fliB PE=3 SV=1 FLIB_SALTY - Lysine-N-methylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fliB PE=3 SV=1 lcl\|NC_016856.1_... - [gene=fliB] [protein=lysine-N-methylase] [protein_id=YP_005237926.1] [location=complement(2057779..2... FLIB_SALTY - Lysine-N-methylase OS=Salmonella typhimurium GN=fliB PE=3 SV=1	528.0	[0..1]	[389..1]
gi\|117672933, gi... - gi\|77629841\|ref\|ZP_00792427.1\| COG0727: Predicted Fe-S-cluster oxidoreductase [Yersinia pseudotuberc...	517.0	[0..11]	[392..1]
Q668E2\|Q668E2_YERPS - Putative N-methylation of lysine residues in flagellin - Yersinia pseudotuberculosis gi\|51597114, gi\|... - gi\|51597114\|ref\|YP_071305.1\| putative N-methylation of lysine residues in flagellin [Yersinia pseudo...	513.0	[0..11]	[392..1]
gi\|77811782, gi\|... - gi\|77813334\|ref\|ZP_00812612.1\| flagellar biosynthesis protein, putative [Shewanella putrefaciens CN-...	440.0	[0..1]	[392..1]
gi\|126176054, gi... - gi\|68541964\|ref\|ZP_00581702.1\| flagellar biosynthesis protein, putative [Shewanella baltica OS155], ...	436.0	[0..1]	[391..1]
gi\|18309781, gi\|... - gi\|18309781\|ref\|NP_561715.1\| hypothetical protein CPE0799 [Clostridium perfringens str. 13], gi\|1814...	407.0	[0..1]	[362..1]
gi\|110675915, gi... - gi\|110801268\|ref\|YP_695248.1\| FliB family protein [Clostridium perfringens ATCC 13124], gi\|110675915...	391.0	[0..1]	[362..1]
gi\|77958966 - gi\|77958966\|ref\|ZP_00822991.1\| hypothetical protein YberA_01000790 [Yersinia bercovieri ATCC 43970]	377.0	[0..11]	[389..1]
gi\|77977644 - gi\|77977644\|ref\|ZP_00833087.1\| hypothetical protein YintA_01002548 [Yersinia intermedia ATCC 29909]	373.0	[0..11]	[390..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLIVTPGY ASQFSCIGSA CEDSCCHDWT IIFDKKSYKN TLNHPKLASL AKEAFIETKT  60
   61 DANQWAQIKL NANGTCPFVN EQQLCAIHAA AGETALSHTC KTY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [104-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRINNVIATT KYESLSLSCP EAARLVLFDA NAFQFEAKSG GAKRPTAANP AWLEKTYDYS  60
   61 LDLLINMGVD WQQALMAIGL LVKVSDQVRQ NALPIAQIDQ RFEQLILLAQ TKEITAQYQK 120
  121 IPY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [227-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPQPQTHAFV SIHDQLCKLH SRSLKPRFTS LNEAIGLLCN EGNQYQIDHL NKAWEEKALP  60
   61 ALSNYQDLFD RYILYSLYHE HFPMIHSQQP WMAFRLLVID CFMIRCYLSA MAFKNNGLTE 120
  121 SDIVLCFQLY SVVRQHKAKF AEGINQTLQE CGIDSIPAAI SLLKTS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits