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View Structure Prediction Details

Protein: gi|24375593, gi|...
Organism: Shewanella oneidensis MR-1
Length: 205 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375593, gi|....

Description E-value Query
Range
Subject
Range
gi|505555 - gi|505555|emb|CAA47300.1| pilin [Neisseria gonorrhoeae]
154.0 [0..1] [183..1]
gi|1073205, gi|8... - gi|861063|emb|CAA89972.1| pilin subunit [Neisseria meningitidis], pir||S55496 fimbrial protein pilE ...
146.0 [0..1] [181..1]

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Predicted Domain #1
Region A:
Residues: [1-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKQNGFSL IELVIVIVIL GLLAATAIPR FLNVTDDAED ASVDGVAGGL STAVSFVRSQ  60
   61 WEVDGRQNSS VILDGTSVSL DPRFGYPTGT SGTDATAMTD ASCQQVFNTV LQSAPRNVLY 120
  121 SQDARNQRYT VRVIDGAGGS ANSITGAAVS GLDLCVYHQV ASLVLNQTTG VPSPAPDLST 180
  181 TGAKGVVYNP GTGKVLSFTQ TPFTP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.69897
Match: 1ay2A
Description: STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle