YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375521, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	623 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375521, gi|....

Description	E-value	Query Range	Subject Range
gi\|78689009, gi\|... - gi\|78689009\|ref\|ZP_00853675.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella s...	434.0	[0..1]	[623..1]
gi\|113971754, gi... - gi\|82494906\|ref\|ZP_00880485.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella s...	433.0	[0..1]	[623..1]
gi\|117614363, gi... - gi\|78684172\|ref\|ZP_00848957.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella s...	432.0	[0..1]	[623..1]
gi\|146865366, gi... - gi\|217971789\|ref\|YP_002356540.1\| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223], g... gi\|68521673, gi\|... - gi\|68540454\|ref\|ZP_00580205.1\| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-term... gi\|151363720, gi... - gi\|152999102\|ref\|YP_001364783.1\| DEAD/DEAH box helicase domain-containing protein [Shewanella baltic...	413.0	[0..1]	[622..1]
gi\|160859221, gi... - gi\|160873699\|ref\|YP_001553015.1\| DEAD/DEAH box helicase domain-containing protein [Shewanella baltic...	412.0	[0..1]	[622..1]
gi\|120600329, gi... - gi\|82741715\|ref\|ZP_00904430.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella s... gi\|77813228, gi\|... - gi\|77813228\|ref\|ZP_00812506.1\| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-term...	412.0	[0..1]	[622..1]
gi\|78036960, gi\|... - gi\|78048530\|ref\|YP_364705.1\| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str....	396.0	[0..2]	[614..21]
gi\|21109105, gi\|... - gi\|21243540\|ref\|NP_643122.1\| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306],...	396.0	[0..2]	[614..5]
gi\|69164352, gi\|... - gi\|69952210\|ref\|ZP_00639746.1\| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-term...	395.0	[0..3]	[621..2]
gi\|28056193, gi\|... - gi\|28198133\|ref\|NP_778447.1\| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1], gi\|28056193\|...	393.0	[0..2]	[609..11]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDERTFRE LGLSENLLRA LDELGYEKPT PIQSASIDPL MAGKDILGQA QTGTGKTGAF  60
   61 ALPLLNKVTS QTTPQILVLA PTRELAVQVA EAFSSYAKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.0
Match:	2hxyA
Description:	No description for 2hxyA was found.

Predicted Domain #2

Region A:
Residues: [100-623]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNFHVLPIY GGQSMQQQLN ALKRGPQVIV GTPGRVMDHM RRGTLKLETL QALVLDEADE  60
   61 MLKMGFIDDI EWILEHTPPQ RQLALFSATM PEQIKRVANK HLKNATNISI AASHTTVDSI 120
  121 EQRFVQVSQH NKLEALVRVL EVENTEGIII FVRTRNSCVE LAEKLEARGY ASSPLHGDMN 180
  181 QQARERAVEQ LKNGKLDILI ATDVAARGLD VERIGHVVNY DIPYDTEAYV HRIGRTGRAG 240
  241 RTGMAILFVT SREMRMLRTI ERATNSRISP MKVPSPETVA ERRLSRLGEQ LAQTMNNDLE 300
  301 FMREAVAQLC QQLEVDTDLL AAALLHQVQQ ERPLQLPAIQ ERVRDERSER SERGSDRGAE 360
  361 RGERRSRESR PMPASLGSAE ALKDNPDLKM CRYVIDVGRE NGVGVGNIVG AIANEANIDS 420
  421 RYIGAIQLYD SVTTVDLPDG MPKDVLQHLK KVRVCGKPLN IREAGDQVFV DSGRGARSDR 480
  481 RPRSDRPAGD RKPRAASGDK PFADRKPRSD KPAGERRPRK PREE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.154902
Match:	2ibmA
Description:	No description for 2ibmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits