YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375517, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	950 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375517, gi|....

Description	E-value	Query Range	Subject Range
gi\|75428562, gi\|... - gi\|75428562\|ref\|ZP_00731764.1\| excinuclease ATPase subunit [Actinobacillus succinogenes 130Z], gi\|74...	738.0	[0..1]	[940..1]
gi\|59479049, gi\|... - gi\|59710948\|ref\|YP_203724.1\| excinuclease ABC subunit A [Vibrio fischeri ES114], gi\|59479049\|gb\|AAW8...	734.0	[0..1]	[941..1]
gi\|90325979, gi\|... - gi\|90412964\|ref\|ZP_01220962.1\| excinuclease ABC subunit A [Photobacterium profundum 3TCK], gi\|903259...	733.0	[0..1]	[940..1]
gi\|82407147, gi\|... - gi\|82494903\|ref\|ZP_00880482.1\| Excinuclease ABC, A subunit [Shewanella sp. MR-4], gi\|82407147\|gb\|EAP...	733.0	[0..1]	[949..1]
gi\|89082277, gi\|... - gi\|89093587\|ref\|ZP_01166535.1\| excinuclease ABC subunit A [Oceanospirillum sp. MED92], gi\|89082277\|g...	731.0	[0..1]	[941..1]
gi\|78507921, gi\|... - gi\|78684169\|ref\|ZP_00848954.1\| Excinuclease ABC, A subunit [Shewanella sp. ANA-3], gi\|78507921\|gb\|EA...	731.0	[0..1]	[949..1]
gi\|54310377, gi\|... - gi\|54310377\|ref\|YP_131397.1\| excinuclease ABC subunit A [Photobacterium profundum SS9], gi\|46914818\|...	730.0	[0..1]	[940..1]
gi\|78689012, gi\|... - gi\|78689012\|ref\|ZP_00853678.1\| Excinuclease ABC, A subunit [Shewanella sp. MR-7], gi\|78511695\|gb\|EAP...	730.0	[0..1]	[949..1]
gi\|77996706, gi\|... - gi\|78044591\|ref\|YP_359131.1\| excinuclease ABC, A subunit [Carboxydothermus hydrogenoformans Z-2901],...	729.0	[0..1]	[942..1]
UVRA_HAEIN - UvrABC system protein A OS=Haemophilus influenzae GN=uvrA PE=3 SV=1 UVRA_HAEIN - UvrABC system protein A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=uvr...	728.0	[0..1]	[943..1]

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Predicted Domain #1

Region A:
Residues: [1-582]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKIEIRGAR THNLKNINLT IPRDKLIVIT GLSGSGKSSL AFDTLYAEGQ RRYVESLSAY  60
   61 ARQFLSLMEK PDVDHIEGLS PAISIEQKST SHNPRSTVGT ITEIYDYLRL LFARVGEPRC 120
  121 PTHGQPLAAQ TVSQMVDKVL EMPEDSRLML LAPVVNGRKG EHVKLLEGLS AQGYIRARID 180
  181 GEVCDLTDPP TLDLHVKHTI EVVVDRFKVR SDIQQRLAES FETALELSGG IAVVASMDEG 240
  241 TTEELIFSAN FACPHCGYSM AELEPRIFSF NNPAGACPTC DGLGVQQFFD PDRVITNPEL 300
  301 SLAGGAIRGW DRRNFYYFQM LSSLADHYKF DVEAPFEQLS DKVRKIVLYG SGKDSIAFKY 360
  361 INDRGDVVVR NHPFEGILNN MDRRYRETES NAVRDELAKF INTQACQSCG GSRLREEARH 420
  421 VFIGDLNLPK LTVWSIGEAL DYFDKLEFTG QKAQIAEKIL KEVRDRLGFL VNVGLNYLSL 480
  481 SRSAETLSGG EAQRIRLASQ IGAGLVGVMY VLDEPSIGLH QRDNERLLQT LIHLRDLGNT 540
  541 VIVVEHDEDA IRMADHIIDI GPGAGVHGGE VICDGPIEKI IA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [583-696]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CDESVTGQYI SGKRNIHIST PRTPFDPKQV IELYGARGNN LRNVDLTIPI GLFTCVTGVS  60
   61 GSGKSTLIND TFFKIAHKML NGATVDEPAP YDRIVGMEQC DKVVDIDQSP IGRT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.54
Match:	2hydA
Description:	No description for 2hydA was found.

Predicted Domain #3

Region A:
Residues: [697-950]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRSNPATYTG IFTPIREIFA GTQESRTRGY QVGRFSFNVK GGRCEACQGD GLIKVEMHFL  60
   61 PDVYVPCDAC KGKRYNRETL EVRYKGKNIH EVLQMTVEDA REFFDAVPAI ARKLQTLMDV 120
  121 GLSYVRLGQS ATTLSGGEAQ RVKLAKELSK RDTGKTLYIL DEPTTGLHFA DIQLLLDVLH 180
  181 RLKSHGNTIV VIEHNLDVIK TADWIIDLGP EGGGGGGTIL ATGTPEDVAL HPTSHTARFL 240
  241 KPLLERDAQL TKQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.09691
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits