YRC Public Data Repository - Protein Structure Prediction

Protein:	NRFA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	467 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRFA_SHEON.

Description	E-value	Query Range	Subject Range
NRFA_VIBPA - Cytochrome c-552 OS=Vibrio parahaemolyticus GN=nrfA PE=3 SV=1 NRFA_VIBPA - Cytochrome c-552 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=nrfA PE=3 SV=1	648.0	[0..2]	[466..3]
NRFA_SHESW - Cytochrome c-552 OS=Shewanella sp. (strain W3-18-1) GN=nrfA PE=3 SV=1 NRFA_SHEPC - Cytochrome c-552 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=nrfA PE=3 SV=1	647.0	[0..1]	[467..1]
NRFA_VIBVU - Cytochrome c-552 OS=Vibrio vulnificus (strain CMCP6) GN=nrfA PE=3 SV=1 NRFA_VIBVY - Cytochrome c-552 OS=Vibrio vulnificus (strain YJ016) GN=nrfA PE=3 SV=1 NRFA_VIBVU - Cytochrome c-552 OS=Vibrio vulnificus GN=nrfA PE=3 SV=1	646.0	[0..2]	[466..3]
gi\|113890294, gi... - gi\|114048852\|ref\|YP_739402.1\| cytochrome c nitrite reductase [Shewanella sp. MR-7], gi\|113890294\|gb\|... gi\|82405330, gi\|... - gi\|82496562\|ref\|ZP_00882128.1\| Nitrite reductase (cytochrome; ammonia-forming) [Shewanella sp. MR-4]...	644.0	[0..1]	[467..7]
NRFA_PHOPR - Cytochrome c-552 OS=Photobacterium profundum GN=nrfA PE=3 SV=1 NRFA_PHOPR - Cytochrome c-552 OS=Photobacterium profundum (strain SS9) GN=nrfA PE=3 SV=1	644.0	[0..1]	[466..1]
NRFA_SHESA - Cytochrome c-552 OS=Shewanella sp. (strain ANA-3) GN=nrfA PE=3 SV=1	643.0	[0..1]	[467..7]
gi\|90413329, gi\|... - gi\|90413329\|ref\|ZP_01221323.1\| putative Formate-dependent nitrite reductase, periplasmic cytochrome ...	630.0	[0..12]	[466..1]
NRFA_SHEAM - Cytochrome c-552 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=nrfA PE=3 SV=1	630.0	[0..1]	[467..1]
NRFA_VIBF1 - Cytochrome c-552 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=nrfA PE=3 SV=1 NRFA_VIBFM - Cytochrome c-552 OS=Vibrio fischeri (strain MJ11) GN=nrfA PE=3 SV=1	630.0	[0..1]	[465..1]
gi\|91188718, gi\|... - gi\|91227190\|ref\|ZP_01261649.1\| nitrite reductase periplasmic cytochrome c552 [Vibrio alginolyticus 1...	629.0	[0..6]	[466..1]

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Predicted Domain #1

Region A:
Residues: [1-467]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKKMTGKTF ALSALVAASF MAAGAMASDK TEPRNEVYKD KFKNQYNSWH DTAKSEELVD  60
   61 ALEQDPNMVI LWAGYAFAKD YKAPRGHMYA VTDVRNTLRT GAPKNAEDGP LPMACWSCKS 120
  121 PDVPRLIEEQ GEDGYFKGKW AKGGPEVTNT IGCSDCHEKG SPKLRISRPY VDRALDAIGT 180
  181 PFSKASKQDK ESMVCAQCHV EYYFEKKEDK KGFVKFPWDM GVTVDQMEVY YDGIEFSDWT 240
  241 HALSKTPMLK AQHPEYETWK MGIHGKNNVS CVDCHMPKVT SPEGKKFTDH KVGNPFDRFE 300
  301 ETCATCHSQT KEFLVGVTNE RKAKVKEMKL KAEEQLVKAH FEAAKAWELG ATEAEMKPIL 360
  361 TDIRHAQWRW DLAIASHGVA AHAPEEALRV LGTSVNKAAD ARVKLAQLLA KKGLTDPVAI 420
  421 PDISTKAKAQ AVLGMDMEKM NAEKEAFKKD MLPKWDAEAK KREATYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	176.0
Match:	1gu6A
Description:	Cytochrome c nitrite reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
electron carrier activity	1.93445663378324	bayes_pls_golite062009
oxidoreductase activity	1.01581677312267	bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors	0.7199875321005	bayes_pls_golite062009
catalytic activity	0.572741711995569	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: