YRC Public Data Repository - Protein Structure Prediction

Protein:	MURA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	419 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MURA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|77977076, gi\|... - gi\|77977076\|ref\|ZP_00832536.1\| COG0766: UDP-N-acetylglucosamine enolpyruvyl transferase [Yersinia in...	508.0	[0..1]	[419..1]
gi\|238796195, gi... - gi\|77963487\|ref\|ZP_00827296.1\| COG0766: UDP-N-acetylglucosamine enolpyruvyl transferase [Yersinia mo...	508.0	[0..1]	[419..1]
gi\|77973399, gi\|... - gi\|77973399\|ref\|ZP_00828947.1\| COG0766: UDP-N-acetylglucosamine enolpyruvyl transferase [Yersinia fr...	508.0	[0..1]	[419..1]
MURA_ENTCL - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Enterobacter cloacae GN=murA PE=1 SV=1 MURA_ENTCC - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Enterobacter cloacae subsp. cloacae (strain ATC...	507.0	[0..1]	[419..1]
gi\|238785104, gi... - gi\|77957468\|ref\|ZP_00821523.1\| COG0766: UDP-N-acetylglucosamine enolpyruvyl transferase [Yersinia be...	506.0	[0..1]	[419..1]
gi\|229836875, gi... - gi\|229836875\|ref\|ZP_04457040.1\| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Yersinia pestis P... gi\|229839225, gi... - gi\|229839225\|ref\|ZP_04459384.1\| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Yersinia pestis b... gi\|229899790, gi... - gi\|229899790\|ref\|ZP_04514931.1\| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Yersinia pestis b... gi\|165989789, gi... - gi\|166011405\|ref\|ZP_02232303.1\| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Yersinia pestis b... MURA_YERPS - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Yersinia pseudotuberculosis GN=murA PE=3 SV=1 gi\|165928113, gi... - gi\|165928113\|ref\|ZP_02223945.1\| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Yersinia pestis b... gi\|167400550, gi... - gi\|167400550\|ref\|ZP_02306059.1\| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Yersinia pestis b... gi\|166211961, gi... - gi\|166211961\|ref\|ZP_02237996.1\| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Yersinia pestis b... gi\|22124060, gi\|... - gi\|22124060\|ref\|NP_667483.1\| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Yersinia pestis KIM]... gi\|218930581, gi... - gi\|218930581\|ref\|YP_002348456.1\| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Yersinia pestis ... MURA_YERPS - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Yersinia pseudotuberculosis serotype I (strain ... MURA_YERPG - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=... MURA_YERP3 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (stra... gi\|165914632, gi... - gi\|89102357\|ref\|ZP_01174997.1\| COG0766: UDP-N-acetylglucosamine enolpyruvyl transferase [Yersinia pe... MURA_YERPA - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN... MURA_YERPN - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) G... gi\|167054010, gi... - gi\|167426970\|ref\|ZP_02318723.1\| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Yersinia pestis b... gi\|166961345, gi... - gi\|167420539\|ref\|ZP_02312292.1\| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Yersinia pestis b... gi\|153997344, gi... - gi\|153997344\|ref\|ZP_02022444.1\| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Yersinia pestis C... MURA_YERPB - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain... MURA_YERPP - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Yersinia pestis (strain Pestoides F) GN=murA PE... MURA_YERPY - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strai... MURA_YERPE - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Yersinia pestis GN=murA PE=3 SV=1	505.0	[0..1]	[419..1]
gi\|45443555, gi\|... - gi\|45443555\|ref\|NP_995094.1\| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Yersinia pestis biov...	504.0	[0..1]	[419..4]
MURA_ERWCT - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Erwinia carotovora subsp. atroseptica GN=murA P... MURA_PECAS - UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Pectobacterium atrosepticum (strain SCRI 1043 /...	503.0	[0..1]	[419..1]

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Predicted Domain #1

Region A:
Residues: [1-419]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKLAIQASP PLAGDVIISG AKNAALPILM AGVLAETDFV VSNVPNLRDV STSCKLLRCL  60
   61 GADVDELGEG KIRISTKNLN EFCAPYDLVK TMRASILILG PLLARYGTAD VSLPGGCAIG 120
  121 ARPVNLHLHG LEMMGAKIEV KEGYIKARVD GRLKGAHIFM DMVSVGATEN LLMAAALADG 180
  181 ETVIENAARE PEVIDLANCL IAMGAKITGV GSATLRIQGV ERLQGCEYRV MPDRIETGSF 240
  241 LVAAAVTRGR IRCLKADPAS LESVIAKLED AGAKITTGED WIELDMEGKR PKAVNIKTAP 300
  301 YPGFPTDMQA QFCVLNVLAQ GTATITETIF ENRFMHVPEL IRMGATMELE GNTCIIQGIE 360
  361 SLSGAQVMAT DLRASASLVI AGLVADGKTI VDRIYHLDRG YEHIEQKFQG LGAHVERVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	144.0
Match:	1ejcA
Description:	UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity	3.87711259634234	bayes_pls_golite062009
catalytic activity	2.91733519293428	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	2.15049036934665	bayes_pls_golite062009
transferase activity	1.9014276549152	bayes_pls_golite062009
3-phosphoshikimate 1-carboxyvinyltransferase activity	0.126471552426721	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: