YRC Public Data Repository - Protein Structure Prediction

Protein:	CYSI_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	565 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYSI_SHEON.

Description	E-value	Query Range	Subject Range
CYSI_SHESA - Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella sp. (strain ANA-3) GN=cysI PE=3 S... CYSI_SHESR - Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella sp. (strain MR-7) GN=cysI PE=3 SV...	508.0	[0..1]	[565..1]
CYSI_SHESM - Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella sp. (strain MR-4) GN=cysI PE=3 SV...	508.0	[0..1]	[565..1]
gi\|19068028 - gi\|19068028\|gb\|AAL14263.1\| sulfite reductase [Neurospora crassa]	502.0	[0..2]	[564..903]
gi\|85105613 - gi\|85105613\|ref\|XP_962002.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32408227, gi\|... - gi\|32408227\|ref\|XP_324595.1\| hypothetical protein [Neurospora crassa], gi\|28923593\|gb\|EAA32766.1\| hy...	502.0	[0..2]	[564..943]
CYSI_SHESW - Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella sp. (strain W3-18-1) GN=cysI PE=3...	502.0	[0..1]	[565..1]
gi\|38103717, gi\|... - gi\|39944266\|ref\|XP_361670.1\| hypothetical protein MGG_04144 [Magnaporthe grisea 70-15], gb\|EAA50385....	502.0	[0..2]	[564..956]
CYSI_SHELP - Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella loihica (strain ATCC BAA-1088 / P...	501.0	[0..1]	[565..1]
CYSI_SHEPC - Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella putrefaciens (strain CN-32 / ATCC...	500.0	[0..1]	[565..1]
CYSI_SHEB5 - Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella baltica (strain OS155 / ATCC BAA-... CYSI_SHEB9 - Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella baltica (strain OS195) GN=cysI PE...	500.0	[0..1]	[565..1]
CYSI_ALTMD - Sulfite reductase [NADPH] hemoprotein beta-component OS=Alteromonas mediterranea (strain DSM 17117 /... CYSI_ALTMD - Sulfite reductase [NADPH] hemoprotein beta-component OS=Alteromonas macleodii (strain DSM 17117 / De...	499.0	[0..1]	[564..9]

Back

Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQKLALNE YLKTDSDYLR GTIKEGLDSS VTGSFSDGDQ QLIKFHGFYQ QDDRDLRNER  60
   61 KEQKLEPLYS FMLRA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.37
Match:	1zj8A
Description:	Structure of Mycobacterium tuberculosis NirA protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [76-565]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVPGGVCTPK QWLGVDEIAS TLTSSNSIRL TTRQTFQYHG IPKRNLKTII QGLDREALDS  60
   61 IAACGDVNRN VMCNPNPVES KLHAQAYEVA KKLSDHLLPH TRAYAEIWLD EEKLLTTEDE 120
  121 TVEPVYGKTY LPRKFKMAVA VPPDNDVDVY TNDLGFIAVA ENGELVGFNL TAGGGMGSTH 180
  181 GEVETFPRLA DDFGFIKTED VMKFAEAVMT VQRDWGNRTN RKRSRLKYTI VDHGYEKFKA 240
  241 EVEVRAGVKF EPKRDVVIGD RGDRYGWVEG VDGKWHLTLF IESGRIKDMP GKSLQTGMRE 300
  301 IAKIHKGDFR MTSNQNMIIA GVAPEDKATI EGLARKRGLL GQVLTQTRGH SIACVALPTC 360
  361 PLAMAEAERY FPEFIDHIDA LQAKNGISDQ AIVVRMTGCP NGCARPFAAE IGLVGKAPGR 420
  421 YNLYLGANFE GTRLNKMYRE NIQEAEILAE LDALFARYAI ERNAGETFGN FTVRVGVVKA 480
  481 VIDAAKDFHG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	114.0
Match:	1aopA
Description:	SULFITE REDUCTASE STRUCTURE AT 1.6 ANGSTROM RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
sulfite reductase (NADPH) activity	10.5477019483845	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	6.9484358652029	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	6.71341182064697	bayes_pls_golite062009
catalytic activity	1.39967796334655	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.747822858523869	bayes_pls_golite062009
oxidoreductase activity	0.272934629796331	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: