YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349988, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	422 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349988, gi|....

Description	E-value	Query Range	Subject Range
gi\|50752715 - gi\|50752715\|ref\|XP_413724.1\| PREDICTED: similar to Na+-dependent purine-selective nucleoside transpo...	543.0	[0..2]	[418..785]
S28A2_MOUSE - Sodium/nucleoside cotransporter 2 OS=Mus musculus GN=Slc28a2 PE=1 SV=2	519.0	[0..2]	[418..174]
gi\|4097697 - gi\|4097697\|gb\|AAD00159.1\| purine-selective sodium/nucleoside cotransporter [Rattus norvegicus]	517.0	[0..2]	[418..173]
S28A1_RABIT - Sodium/nucleoside cotransporter 1 OS=Oryctolagus cuniculus GN=SLC28A1 PE=2 SV=1	516.0	[0..2]	[418..172]
SLC28A1 - solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	515.0	[0..2]	[418..177]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQILVSLLGI ITLLAVAYLA SENRRAINYR TVGLAFLLQL ALGAFVMYSA LGQSMIFSMA  60
   61 AAVSNVISYS NDGMSFMFGG LVSDKMYE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.69897
Match:	PF01773.11
Description:	No description for PF01773.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFGAGGFVIA FKVLPIIVFF SALSAVLYYL GIMQLVVKAV GGALQKLLNT SKAESMSASA  60
   61 NIFLGVTEAP LLIKPYMPRM TRSELFAVMC GGLASIAGTM LAGYAQLGIK MEYLLAASFM 120
  121 AAPGGLLFAK LLIPQTETIN DAHLQLTEEN QPRNLLDAAT TGTMSGLSLA LAVGAML

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.958607
Match:	PF07670.5
Description:	No description for PF07670.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [266-422]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSFISLVALF NGMLGGIGAW FGLEGLTLQQ ILGYLFAPLA WLMGISWNEA MLAGSFIGQK  60
   61 IVINEFFAYI NLAPYLSGDA LVATTGQPMS ERTQVILSFA LCGFANIGTV AIAIAGIGGL 120
  121 VPERRAEIAS LGLKALAAGI LSNLMAATIA GLFMSLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits