YRC Public Data Repository - Protein Structure Prediction

Protein:	HMUV_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMUV_SHEON.

Description	E-value	Query Range	Subject Range
gi\|119720457, gi... - gi\|119720457\|ref\|YP_920952.1\| spermidine/putrescine ABC transporter ATPase subunit [Thermofilum pend...	326.0	[0..2]	[243..7]
gi\|15643988, gi\|... - gi\|4981786\|gb\|AAD36307.1\|AE001779_9 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|281412971\|ref... - ABC transporter related protein [Thermotoga naphthophila RKU-10] gi\|170289367, gi... - gi\|170289367\|ref\|YP_001739605.1\| ABC transporter related [Thermotoga sp. RQ2], gi\|170176870\|gb\|ACB09... gi\|7442603 - pir\|\|A72279 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)	321.0	[0..1]	[238..6]
CYSA_SYNY3 - Sulfate/thiosulfate import ATP-binding protein CysA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ... CYSA_SYNY3 - Sulfate/thiosulfate import ATP-binding protein CysA OS=Synechocystis sp. (strain ATCC 27184 / PCC 68... gi\|7442560 - pir\|\|S76743 hypothetical transport protein - Synechocystis sp. (strain PCC 6803)	321.0	[0..1]	[245..5]
gi\|159794850, gi... - pir\|\|A71243 probable maltose/maltodextrin transport ATP-binding protein - Pyrococcus horikoshii, gi\|... gi\|14590136, gi\|... - gi\|3256589\|dbj\|BAA29272.1\| 362aa long hypothetical maltose/maltodextrin transport ATP-binding protei...	320.0	[0..1]	[237..6]
gi\|15073645 - gi\|15073645\|emb\|CAC45287.1\| Probable putrescine transport ATP-binding protein [Sinorhizobium melilot... gi\|15964468 - gi\|15964468\|ref\|NP_384821.1\| putrescine ABC transporter ATP-binding protein [Sinorhizobium meliloti ...	320.0	[0..1]	[240..26]
gi\|5457621, gi\|1... - gi\|5457621\|emb\|CAB49112.1\| Sugar transport, ABC transporter ATP-binding protein [Pyrococcus abyssi G... gi\|5457621, gi\|7... - pir\|\|A75208 sugar transport ATP-binding protein. PAB2232 - Pyrococcus abyssi (strain Orsay), gi\|5457...	319.0	[0..1]	[237..6]
gi\|18894174, gi\|... - gi\|18978342\|ref\|NP_579699.1\| putative multiple sugar-binding transport ATP-binding protein [Pyrococc...	319.0	[0..1]	[238..15]
gi\|75857826, gi\|... - gi\|75857826\|ref\|ZP_00765438.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com...	319.0	[0..2]	[251..7]
gi\|221236171, gi... - gi\|221236171\|ref\|YP_002518608.1\| spermidine/putrescine transport ATP-binding protein potA [Caulobact... gi\|25384753 - pir\|\|D87637 hypothetical protein CC3134 [imported] - Caulobacter crescentus gi\|16127364, gi\|... - gi\|16127364\|ref\|NP_421928.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Caulobacter...	319.0	[0..2]	[240..18]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRLSYAIGD KAVLNNIRVQ FQPGSVTALL GPNGAGKSTL LKALCQEIPS AQGSIKLGHC  60
   61 QLVDWPRAEL AKSLAVLPQH ASLTFPFTVD EVVAMGLYPL TLSQKEGQQL VTKWLAEVGV 120
  121 LHLARRSYPT LSGGEKQRVQ LARVLTQLSQ SPFPPILLLD EPTSALDLAQ QHKVLALAKN 180
  181 LAHKHAYTVI VVLHDLNQAA RYSDRVIVLK QGEIVSEGTP NDALSIDIIR QVWDYEPEFI 240
  241 PAPQGDYPLI F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.69897
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits