YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375171, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	317 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375171, gi|....

Description	E-value	Query Range	Subject Range
gi\|166857129, gi... - gi\|76795368\|ref\|ZP_00777741.1\| Periplasmic binding protein [Thermoanaerobacter ethanolicus ATCC 3322... gi\|241903823, gi... - gi\|241903823\|ref\|ZP_04788540.1\| periplasmic binding protein [Thermoanaerobacter brockii subsp. finni...	262.0	[0..7]	[312..17]
gi\|114843982, gi... - gi\|167040563\|ref\|YP_001663548.1\| periplasmic binding protein [Thermoanaerobacter sp. X514], gi\|16685...	261.0	[0..7]	[312..17]
gi\|20806884 - gi\|20806884\|ref\|NP_622055.1\| ABC-type Fe3+-siderophores transport systems, periplasmic components [T... gi\|20806884, gi\|... - gi\|20806884\|ref\|NP_622055.1\| ABC-type Fe3+-siderophores transport systems, periplasmic components [T...	261.0	[0..1]	[312..24]
gi\|5457942, gi\|1... - gi\|5457942\|emb\|CAB49432.1\| Iron (III) ABC transporter, periplasmic-binding protein, putative [Pyroco... gi\|7521157, gi\|5... - pir\|\|A75169 probable iron (III) ABC transporter, periplasmic-binding protein PAB0349 - Pyrococcus ab...	231.0	[0..22]	[312..61]
gi\|18893949, gi\|... - gi\|18978146\|ref\|NP_579503.1\| iron III ABC transporter, ATP-binding protein [Pyrococcus furiosus DSM ...	231.0	[0..30]	[312..66]
gi\|29894344, gi\|... - gi\|30018802\|ref\|NP_830433.1\| Iron(III) dicitrate-binding protein [Bacillus cereus ATCC 14579], gi\|29...	231.0	[0..1]	[308..13]
gi\|47525892, gi\|... - gi\|47525892\|ref\|YP_017241.1\| iron compound ABC transporter, iron compound-binding protein [Bacillus ... gi\|30260769, gi\|... - gi\|30260769\|ref\|NP_843146.1\| iron compound ABC transporter, iron compound-binding protein [Bacillus ... gi\|254722110 - gi\|254722110\|ref\|ZP_05183899.1\| iron compound ABC transporter, iron compound-binding protein [Bacill... gi\|190559484, gi... - gi\|190569401\|ref\|ZP_03022287.1\| iron compound ABC transporter, iron compound-binding protein [Bacill... gi\|254684307 - gi\|254684307\|ref\|ZP_05148167.1\| iron compound ABC transporter, iron compound-binding protein [Bacill... gi\|170708508, gi... - gi\|170708508\|ref\|ZP_02898950.1\| iron compound ABC transporter, iron compound-binding protein [Bacill... gi\|229268010, gi... - gi\|229603602\|ref\|YP_002865214.1\| iron compound ABC transporter, iron compound-binding protein [Bacil... gi\|170689050, gi... - gi\|170689050\|ref\|ZP_02880250.1\| iron compound ABC transporter, iron compound-binding protein [Bacill... gi\|227006666, gi... - gi\|227816515\|ref\|YP_002816524.1\| iron compound ABC transporter, iron compound-binding protein [Bacil... gi\|254762271 - gi\|254762271\|ref\|ZP_05214115.1\| iron compound ABC transporter, iron compound-binding protein [Bacill... gi\|254754996 - gi\|254754996\|ref\|ZP_05207030.1\| iron compound ABC transporter, iron compound-binding protein [Bacill... gi\|254742017 - gi\|254742017\|ref\|ZP_05199704.1\| iron compound ABC transporter, iron compound-binding protein [Bacill... gi\|254738771 - gi\|254738771\|ref\|ZP_05196474.1\| iron compound ABC transporter, iron compound-binding protein [Bacill... gi\|49177533, gi\|... - gi\|49183606\|ref\|YP_026858.1\| iron compound ABC transporter, iron compound-binding protein [Bacillus ...	229.0	[0..1]	[308..13]
gi\|3258088, gi\|1... - gi\|3258088\|dbj\|BAA30771.1\| 345aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14591428\|... gi\|7519230 - pir\|\|C71046 hypothetical protein PH1659 - Pyrococcus horikoshii	228.0	[0..2]	[311..8]
gi\|48857189, gi\|... - gi\|67917396\|ref\|ZP_00511030.1\| Periplasmic binding protein [Clostridium thermocellum ATCC 27405], gi...	228.0	[0..1]	[311..11]

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Predicted Domain #1

Region A:
Residues: [1-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFQAARYRF NKLSQPTDSN AFNKWLCLLP AVTALFSFNA WSATQDIKLV SAGAGVTELV  60
   61 LALDAADELV AVDATSYVPE QLSSVAKLGY HRMLSAEGIM ALSPTLVVGS DVMGPETTLN 120
  121 VLKQANIKVV QLPSSADEQQ LMSNIDTLAQ SLNRTDKAAP LKQELHQRLD KLNKQKQQLS 180
  181 QHNAQPKILF MLLQEGRGAR VGGKGTAADT IIALSGAKNI ADFEGYKTLS QEGILALQPD 240
  241 VILLSNRSEK TDSQTNSQTT HALLKEMPLL AHTPAGQNGH IQTLAPQALL GGLGISAIGA 300
  301 AETLADALLT QGKTAGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	2r79A
Description:	No description for 2r79A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits