YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349939, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	532 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349939, gi|....

Description	E-value	Query Range	Subject Range
gi\|77996178, gi\|... - gi\|78044063\|ref\|YP_360551.1\| long-chain-fatty-acid--CoA ligase [Carboxydothermus hydrogenoformans Z-...	464.0	[0..2]	[531..15]
gi\|75177266 - gi\|75177266\|ref\|ZP_00697355.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Shig...	464.0	[0..3]	[532..22]
gi\|110641922, gi... - gi\|110641922\|ref\|YP_669652.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli 536], gi\|110343514... gi\|75513698 - gi\|75513698\|ref\|ZP_00736074.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75255568 - gi\|75255568\|ref\|ZP_00727355.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75241326 - gi\|75241326\|ref\|ZP_00725177.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75227933 - gi\|75227933\|ref\|ZP_00714633.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75215166 - gi\|75215166\|ref\|ZP_00713611.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75208737 - gi\|75208737\|ref\|ZP_00709029.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|124531917, gi... - gi\|124531917\|ref\|ZP_01702000.1\| AMP-dependent synthetase and ligase [Escherichia coli B], gi\|1244982... gi\|75195871 - gi\|75195871\|ref\|ZP_00705941.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... tr\|A0A109ZPL0\|A0... - Long-chain fatty acid--CoA ligase OS=Escherichia coli (strain K12) GN=C3026_10285 PE=4 SV=1 gi\|75190835 - gi\|75190835\|ref\|ZP_00704102.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|83584990 - gi\|83584990\|ref\|ZP_00923645.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch...	463.0	[0..3]	[532..22]
gi\|91072594, gi\|... - gi\|91211020\|ref\|YP_541006.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli UTI89], gi\|91072594... gi\|115513089, gi... - gi\|117623965\|ref\|YP_852878.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli APEC O1], gi\|11551...	463.0	[0..3]	[532..33]
LCFA_ECOLI - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (Long-chain acyl-CoA synthetase) (Acyl-CoA synthetase... gi\|215265088, gi... - gi\|215487016\|ref\|YP_002329447.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O127:H6 str. E2... gi\|209912429, gi... - gi\|209919170\|ref\|YP_002293254.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli SE11], gi\|20991... gi\|194411949, gi... - gi\|194430022\|ref\|ZP_03062529.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli B171], gi\|194411... gi\|193071282, gi... - gi\|193071282\|ref\|ZP_03052201.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli E110019], gi\|192... gi\|218352099, gi... - gi\|218695367\|ref\|YP_002403034.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli 55989], gi\|2183... gi\|218427305, gi... - gi\|218689741\|ref\|YP_002397953.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli ED1a], gi\|21842... gi\|218365436, gi... - gi\|218558667\|ref\|YP_002391580.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli S88], gi\|218365... gi\|218361145, gi... - gi\|218554377\|ref\|YP_002387290.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli IAI1], gi\|21836... gi\|188495135, gi... - gi\|188495135\|ref\|ZP_03002405.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli 53638], gi\|18849... gi\|170680693, gi... - gi\|170680693\|ref\|YP_001743441.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli SMS-3-5], gi\|17... gi\|169889296, gi... - gi\|170081461\|ref\|YP_001730781.1\| acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) [Escherichi... EG11530 - acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) / Acyl-CoA synthase LCFA_ECOL6 - Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=... gi\|82776971, gi\|... - gi\|82776971\|ref\|YP_403320.1\| long-chain-fatty-acid--CoA ligase [Shigella dysenteriae Sd197], gi\|8124... gi\|218432400, gi... - gi\|218705303\|ref\|YP_002412822.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli UMN026], gi\|218... gi\|218699627, gi... - gi\|218699627\|ref\|YP_002407256.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli IAI39], gi\|2183... gi\|242377526, gi... - gi\|251785253\|ref\|YP_002999557.1\| hypothetical protein B21_01763 [Escherichia coli BL21], gi\|24237752... gi\|238901019, gi... - gi\|238901019\|ref\|YP_002926815.1\| acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) [Escherichi... gi\|89108644, gi\|... - gi\|89108644\|ref\|AP_002424.1\| acyl-CoA synthetase [Escherichia coli str. K-12 substr. W3110], gi\|1736... gi\|253977959, gi... - gi\|254288652\|ref\|YP_003054400.1\| acyl-CoA synthase [Escherichia coli BL21(DE3)], gi\|253977959\|gb\|ACT... gi\|253973765, gi... - gi\|254161864\|ref\|YP_003044972.1\| acyl-CoA synthase [Escherichia coli B str. REL606], gi\|253973765\|gb... gi\|157066949, gi... - gi\|157161269\|ref\|YP_001458587.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli HS], gi\|1570669... gi\|157078816, gi... - gi\|157156786\|ref\|YP_001463105.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli E24377A], gi\|15... LCFA_ECOL6 - Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6 GN=fadD PE=3 SV=1 EG11530 - acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) / Acyl-CoA synthase	463.0	[0..3]	[532..11]
gi\|26248063, gi\|... - gi\|26248063\|ref\|NP_754103.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli CFT073], gi\|2610846...	463.0	[0..3]	[532..33]
gi\|24112807, gi\|... - gi\|24112807\|ref\|NP_707317.1\| long-chain-fatty-acid--CoA ligase [Shigella flexneri 2a str. 301], gi\|2... gi\|30062941, gi\|... - gi\|30062941\|ref\|NP_837112.1\| long-chain-fatty-acid--CoA ligase [Shigella flexneri 2a str. 2457T], gi...	463.0	[0..3]	[532..33]
gi\|56419203, gi\|... - gi\|56419203\|ref\|YP_146521.1\| acyl-CoA synthetase [Geobacillus kaustophilus HTA426], gi\|56379045\|dbj\|...	463.0	[0..16]	[531..2]
gi\|15831768, gi\|... - gi\|15831768\|ref\|NP_310541.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. Sakai]... gi\|188024849, gi... - gi\|188024849\|ref\|ZP_02774387.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|187776032, gi... - gi\|187776032\|ref\|ZP_02799887.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... LCFA_ECO57 - Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1 gi\|254793427, gi... - gi\|254793427\|ref\|YP_003078264.1\| acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase [Escherichia... gi\|15802218, gi\|... - gi\|15802218\|ref\|NP_288241.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 EDL933], gi... gi\|25293428, gi\|... - pir\|\|F85791 long-chain-fatty-acid-CoA ligase [imported] - Escherichia coli (strain O157:H7, substrai... gi\|189406059, gi... - gi\|189406059\|ref\|ZP_02826039.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC5... gi\|189405101, gi... - gi\|189405101\|ref\|ZP_02813224.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC8... gi\|189360342, gi... - gi\|189403489\|ref\|ZP_02795784.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|189402537, gi... - gi\|189402537\|ref\|ZP_02783121.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|209397101, gi... - gi\|209397101\|ref\|YP_002270882.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC... gi\|208821900, gi... - gi\|208821900\|ref\|ZP_03262220.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|208731034, gi... - gi\|208816691\|ref\|ZP_03257811.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|208810251, gi... - gi\|208810251\|ref\|ZP_03252127.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4...	462.0	[0..3]	[532..11]
LCFA_SALTY - Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1 gi\|161363037, gi... - gi\|161613673\|ref\|YP_001587638.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enter... LCFA_SALTI - Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1 LCFA_SALTI - Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1 gi\|16760708 - gi\|16760708\|ref\|NP_456325.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica ... gi\|197938682, gi... - gi\|198244166\|ref\|YP_002215322.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enter... LCFA_SALTY - Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1 gi\|197261708, gi... - gi\|197261708\|ref\|ZP_03161782.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enteri... LCFA_SALTY - Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN... gi\|194735459, gi... - gi\|194735459\|ref\|YP_002114852.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enter... gi\|29141534, gi\|... - gi\|29141534\|ref\|NP_804876.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica ... gi\|194456682, gi... - gi\|194470318\|ref\|ZP_03076302.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enteri... gi\|207856675, gi... - gi\|207856675\|ref\|YP_002243326.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enter... lcl\|NC_016856.1_... - [gene=fadD] [protein=long-chain-fatty-acid--CoA ligase] [protein_id=YP_005237758.1] [location=comple... gi\|205350740, gi... - gi\|205360226\|ref\|ZP_02681918.2\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enteri... gi\|199602823, gi... - gi\|200390378\|ref\|ZP_03216989.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enteri... gi\|168237883, gi... - gi\|197289230\|gb\|EDY28597.1\| long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoAsynthetase) [Salmo... gi\|168234289, gi... - gi\|205331771\|gb\|EDZ18535.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica s... gi\|205328677, gi... - gi\|205328677\|gb\|EDZ15441.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica s... gi\|167553502, gi... - gi\|205322085\|gb\|EDZ09924.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica s... gi\|194447353, gi... - gi\|194447353\|ref\|YP_002045864.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enter... gi\|194444947, gi... - gi\|194444947\|ref\|YP_002041075.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enter... gi\|205342578, gi... - gi\|205342578\|gb\|EDZ29342.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica s... gi\|168241410, gi... - gi\|205339101\|gb\|EDZ25865.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica s...	462.0	[0..3]	[532..11]

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Predicted Domain #1

Region A:
Residues: [1-532]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYDQESQLE LGKYSSLIDL IERTSQRFGD KTAYACLGKN SSFNEIERDS RYFAAYLQNN  60
   61 TNLKPGDRIA IQLPNITQFV IAAYGALRAG LILVNTNPLY TERELIHQFN DSGAKALVVL 120
  121 SDLLPTLAKV VATTPIELVI STHPLDLIDP QVQPKTGLKN VEFCHVLQQG ALLPFTRFVP 180
  181 TLSDLAALQY TGGTTGLSKG AMLTHGNMLA NAAQVKSRIG SVISEGEDIF VAPLPIYHIY 240
  241 AFMVNLVLYF ECGGCSVLIP NPRDINGLIK TLAKYPFTGF AGLNTLFVAL CHQPEFKALN 300
  301 FSHLKITISG GTALTAAAAN LWQQTTGNTI SEGYGLSETS PVISLNAPGY QKIGTIGKPV 360
  361 LGTEVKLLDE SGNEVTQGTA GELAARGPQV MLGYWNNPQE TANVMTPDGF FKTGDIAILN 420
  421 EEGFHQIVDR KKDMIIVSGF NVYPNEVENV LASHPNIIEC AVVGVKDDHS GEAVKAFIVL 480
  481 KDDSQDHEKI KTAILNFCRE QLTAYKLPKQ IEFMSQLPKS TVGKILRREL KN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	107.0
Match:	2v7bA
Description:	No description for 2v7bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits