YRC Public Data Repository - Protein Structure Prediction

Protein:	APAH_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APAH_SHEON.

Description	E-value	Query Range	Subject Range
gi\|1003022 - gi\|1003022\|gb\|AAA79340.1\| ApaH gi\|1003022\|gb\|AA... - ApaH	244.0	[0..1]	[269..1]
gi\|119389184, gi... - gi\|119389185\|pdb\|2DFJ\|B Chain B, Crystal Structure Of The Diadenosine Tetraphosphate Hydrolase From ... APAH_SHIFL - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Shigella flexneri GN=apaH PE=1 SV=1 gi\|30039858, gi\|... - gi\|30061616\|ref\|NP_835787.1\| diadenosine tetraphosphatase [Shigella flexneri 2a str. 2457T], gi\|3003... gi\|24111495, gi\|... - gi\|24111495\|ref\|NP_706005.1\| diadenosine tetraphosphatase [Shigella flexneri 2a str. 301], gi\|240502... APAH_SHIF8 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Shigella flexneri serotype 5b (strain 8401) GN=ap... APAH_ECOSE - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli (strain SE11) GN=apaH PE=3 SV=1 APAH_ECO8A - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O8 (strain IAI1) GN=apaH PE=3 SV... gi\|75255704, gi\|... - gi\|75255704\|ref\|ZP_00727470.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr... gi\|194412099, gi... - gi\|75208905\|ref\|ZP_00709182.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr... APAH_ECOHS - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O9:H4 (strain HS) GN=apaH PE=3 S... APAH_ECO24 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O139:H28 (strain E24377A / ETEC)...	244.0	[0..1]	[269..1]
gi\|195937725 - gi\|195937725\|ref\|ZP_03083107.1\| diadenosine tetraphosphatase [Escherichia coli O157:H7 str. EC4024] gi\|13359510, gi\|... - gi\|15829308\|ref\|NP_308081.1\| diadenosine tetraphosphatase [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189376016, gi... - gi\|189376016\|gb\|EDU94432.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|208814315, gi... - gi\|208814315\|ref\|ZP_03255644.1\| bis(5'-nucleosyl)-tetraphosphatase [Escherichia coli O157:H7 str. EC... gi\|208725417, gi... - gi\|208805616\|ref\|ZP_03247953.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O... APAH_ECO5E - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) G... gi\|208739236, gi... - gi\|208819113\|ref\|ZP_03259433.1\| bis(5'-nucleosyl)-tetraphosphatase [Escherichia coli O157:H7 str. EC... gi\|217320465, gi... - gi\|217324244\|ref\|ZP_03440328.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O... gi\|188014314, gi... - gi\|188014314\|gb\|EDU52436.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... APAH_ECO57 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O157:H7 GN=apaH PE=3 SV=1 gi\|168762815, gi... - gi\|189366966\|gb\|EDU85382.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|168756879, gi... - gi\|189356059\|gb\|EDU74478.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|168776971, gi... - gi\|187767712\|gb\|EDU31556.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|168766743, gi... - gi\|189364224\|gb\|EDU82643.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|168785106, gi... - gi\|189374911\|gb\|EDU93327.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|189000772, gi... - gi\|189000772\|gb\|EDU69758.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|209746922, gi... - pir\|\|F90635 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) (EC 3.6.1.41) [similarity] - Escherichi... gi\|12512744, gi\|... - gi\|15799734\|ref\|NP_285746.1\| diadenosine tetraphosphatase [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|254590588, gi... - gi\|254791188\|ref\|YP_003076025.1\| diadenosine tetraphosphatase [Escherichia coli O157:H7 str. TW14359... gi\|75227577, gi\|... - gi\|75227577\|ref\|ZP_00714332.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr...	244.0	[0..1]	[269..1]
gi\|191174116, gi... - gi\|75237156\|ref\|ZP_00721204.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr... APAH_ECO81 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O81 (strain ED1a) GN=apaH PE=3 S... APAH_ECOL5 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G...	243.0	[0..1]	[269..1]
gi\|188487091, gi... - gi\|75515637\|ref\|ZP_00737794.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr... APAH_SHISS - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Shigella sonnei (strain Ss046) GN=apaH PE=3 SV=1 APAH_ECODH - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli (strain K12 / DH10B) GN=apaH PE=... gi\|83584906, gi\|... - gi\|83584906\|ref\|ZP_00923563.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr... APAH_ECO55 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli (strain 55989 / EAEC) GN=apaH PE... APAH_SHIB3 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Shigella boydii serotype 18 (strain CDC 3083-94 /... APAH_SHIBS - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Shigella boydii serotype 4 (strain Sb227) GN=apaH... gi\|85674302, gi\|... - gi\|89106933\|ref\|AP_000713.1\| diadenosine tetraphosphatase [Escherichia coli str. K-12 substr. W3110]... APAH_ECOLI - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A h... gi\|253972075, gi... - gi\|254160174\|ref\|YP_003043282.1\| diadenosinetetraphosphatase [Escherichia coli B str. REL606], gi\|25... EG10048 - diadenosine tetraphosphatase / Dinucleoside tetraphosphatase, symmetrical; diadenosine tetraphosphat... gi\|254037466, gi... - gi\|254037466\|ref\|ZP_04871543.1\| bis(5'-nucleosyl)-tetraphosphatase [Escherichia sp. 1_1_43], gi\|2268... gi\|253325963, gi... - gi\|254286977\|ref\|YP_003052725.1\| diadenosinetetraphosphatase [Escherichia coli BL21(DE3)], gi\|253976... gi\|251783615, gi... - gi\|251783615\|ref\|YP_002997919.1\| hypothetical protein B21_00052 [Escherichia coli BL21], gi\|24237588... APAH_ECOBW - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli (strain K12 / MC4100 / BW2952) G... EG10048 - diadenosine tetraphosphatase / Dinucleoside tetraphosphatase, symmetrical; diadenosine tetraphosphat... APAH_ECOLC - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / C... gi\|124531317, gi... - gi\|124531317\|ref\|ZP_01701645.1\| bis(5'nucleosyl)-tetraphosphatase, ApaH [Escherichia coli B], gi\|124...	243.0	[0..1]	[269..1]
APAH_ECO45 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=a... APAH_ECOUT - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli (strain UTI89 / UPEC) GN=apaH PE... gi\|226902107, gi... - gi\|237704195\|ref\|ZP_04534676.1\| diadenosine tetraphosphatase [Escherichia sp. 3_2_53FAA], gi\|2269021... APAH_ECOK1 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O1:K1 / APEC GN=apaH PE=3 SV=1	243.0	[0..1]	[269..1]
APAH_ECOL6 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7009... APAH_ECO27 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)... APAH_ECOL6 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O6 GN=apaH PE=3 SV=1 gi\|227885050, gi... - gi\|227885050\|ref\|ZP_04002855.1\| diadenosine tetraphosphatase [Escherichia coli 83972], gi\|227837879\|... sp\|B7UI97\|APAH_ECO27 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)...	243.0	[0..1]	[269..1]
gi\|40919 - gi\|40919\|emb\|CAA28416.1\| unnamed protein product [Escherichia coli]	242.0	[0..1]	[269..1]
gi\|193070990, gi... - gi\|75234138\|ref\|ZP_00718542.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr...	242.0	[0..1]	[269..1]
APAH_SHIDS - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Shigella dysenteriae serotype 1 (strain Sd197) GN...	242.0	[0..1]	[269..1]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHYFVGDVQ GCFAELQRLL AKVDFNPSRD ELWAVGDLVA RGPDSLATLR FFQSLGDAGK  60
   61 IVLGNHDLHL LALHGKLKRD KPSDNLTPLL NAPDISSLID WLRQQPLMRE LPEHKVIMTH 120
  121 AGVPPQWSLE VLRQESLLVS QALKQNDYLD ALISQMYTDT AERWDPSAIG INRLRFCINA 180
  181 LTRMRYLYVD GHLDFDCKQP PEDCSNPQLR PWFEFTSTLR NSHILVFGHW AALMGKVDAP 240
  241 NLKALDTGCC WGEHLTLWHL EKDQKITQKK LKKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	2dfjA
Description:	No description for 2dfjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits