YRC Public Data Repository - Protein Structure Prediction

Protein:	LPTD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	765 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPTD_SHEON.

Description	E-value	Query Range	Subject Range
LPTD_SHESM - LPS-assembly protein LptD OS=Shewanella sp. (strain MR-4) GN=lptD PE=3 SV=1 LPTD_SHESR - LPS-assembly protein LptD OS=Shewanella sp. (strain MR-7) GN=lptD PE=3 SV=1	743.0	[0..1]	[765..1]
LPTD_SHESA - LPS-assembly protein LptD OS=Shewanella sp. (strain ANA-3) GN=lptD PE=3 SV=1	743.0	[0..1]	[765..1]
gi\|167550724, gi... - gi\|205324339\|gb\|EDZ12178.1\| LPS-assembly protein [Salmonella enterica subsp. enterica serovar Saintp... gi\|205337498, gi... - gi\|205337498\|gb\|EDZ24262.1\| LPS-assembly protein [Salmonella enterica subsp. enterica serovar Heidel... LPTD_SALTY - LPS-assembly protein LptD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=lptD PE... OSTA_SALTY - LPS-assembly protein OS=Salmonella typhimurium GN=imp PE=3 SV=1 LPTD_SALTY - LPS-assembly protein lptD OS=Salmonella typhimurium GN=lptD PE=3 SV=1 gi\|194450910, gi... - gi\|194450910\|ref\|YP_002044061.1\| organic solvent tolerance protein [Salmonella enterica subsp. enter... gi\|197265948, gi... - gi\|197265948\|ref\|ZP_03166022.1\| LPS-assembly protein [Salmonella enterica subsp. enterica serovar Sa...	719.0	[0..2]	[761..4]
gi\|213427536 - gi\|213427536\|ref\|ZP_03360286.1\| organic solvent tolerance protein [Salmonella enterica subsp. enteri... gi\|214001246 - gi\|214001246\|ref\|ZP_03411981.1\| organic solvent tolerance protein [Salmonella enterica subsp. enteri... gi\|16759088 - gi\|16759088\|ref\|NP_454705.1\| organic solvent tolerance protein [Salmonella enterica subsp. enterica ... LPTD_SALTI - LPS-assembly protein LptD OS=Salmonella typhi GN=lptD PE=3 SV=1 OSTA_SALTI - LPS-assembly protein OS=Salmonella typhi GN=imp PE=3 SV=1 gi\|29136262, gi\|... - gi\|29140638\|ref\|NP_803980.1\| organic solvent tolerance protein [Salmonella enterica subsp. enterica ...	718.0	[0..2]	[761..4]
LPTD_SALPA, OSTA... - LPS-assembly protein OS=Salmonella paratyphi A GN=imp PE=3 SV=1, LPS-assembly protein lptD OS=Salmon... LPTD_SALPA - LPS-assembly protein LptD OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=lptD PE=3 SV=1 gi\|197092776, gi... - gi\|197361301\|ref\|YP_002140936.1\| organic solvent tolerance protein [Salmonella enterica subsp. enter...	717.0	[0..2]	[761..4]
LPTD_SHIBS - LPS-assembly protein LptD OS=Shigella boydii serotype 4 (strain Sb227) GN=lptD PE=3 SV=1 LPTD_SHISS - LPS-assembly protein LptD OS=Shigella sonnei (strain Ss046) GN=lptD PE=3 SV=1	715.0	[0..2]	[761..4]
EG11569 - LPS assembly OM complex LptDE, beta-barrel component / LPS assembly OM complex LptDE, beta-barrel co... OSTA_ECOLI - LPS-assembly protein precursor (Organic solvent tolerance protein) - Escherichia coli gi\|75234133 - gi\|75234133\|ref\|ZP_00718537.1\| COG1452: Organic solvent tolerance protein OstA [Escherichia coli E11... gi\|170021588, gi... - gi\|170021588\|ref\|YP_001726542.1\| organic solvent tolerance protein [Escherichia coli ATCC 8739], gi\|... EG11569 - LPS assembly OM complex LptDE, beta-barrel component / LPS assembly OM complex LptDE, beta-barrel co... gi\|21321935, gi\|... - gi\|89106938\|ref\|AP_000718.1\| exported protein required for envelope biosynthesis and integrity [Esch... gi\|238899459, gi... - gi\|238899459\|ref\|YP_002925255.1\| exported protein required for envelope biosynthesis and integrity [... gi\|242375893, gi... - gi\|251783620\|ref\|YP_002997924.1\| hypothetical protein B21_00057 [Escherichia coli BL21], gi\|24237589... gi\|254286982, gi... - gi\|254286982\|ref\|YP_003052730.1\| organic solvent tolerance protein precursor [Escherichia coli BL21(... gi\|226840577, gi... - gi\|254037471\|ref\|ZP_04871548.1\| organic solvent tolerance protein [Escherichia sp. 1_1_43], gi\|22684... gi\|254160179, gi... - gi\|254160179\|ref\|YP_003043287.1\| organic solvent tolerance protein precursor [Escherichia coli B str... gi\|75227582 - gi\|75227582\|ref\|ZP_00714337.1\| COG1452: Organic solvent tolerance protein OstA [Escherichia coli B7A... gi\|170079717, gi... - gi\|170079717\|ref\|YP_001729037.1\| exported protein required for envelope biosynthesis and integrity [... gi\|75194275, gi\|... - gi\|75194275\|ref\|ZP_00704345.1\| COG1452: Organic solvent tolerance protein OstA [Escherichia coli HS]... gi\|188489606, gi... - gi\|188494407\|ref\|ZP_03001677.1\| organic solvent tolerance protein [Escherichia coli 53638], gi\|18848... gi\|157155793, gi... - gi\|75189158\|ref\|ZP_00702425.1\| COG1452: Organic solvent tolerance protein OstA [Escherichia coli E24... gi\|209910505, gi... - gi\|209917246\|ref\|YP_002291330.1\| organic solvent tolerance protein [Escherichia coli SE11], gi\|20991... gi\|218552639, gi... - gi\|218552639\|ref\|YP_002385552.1\| organic solvent tolerance protein [Escherichia coli IAI1], gi\|21835... gi\|218350258, gi... - gi\|218693526\|ref\|YP_002401193.1\| organic solvent tolerance protein [Escherichia coli 55989], gi\|2183... gi\|218368462, gi... - gi\|218698476\|ref\|YP_002406105.1\| organic solvent tolerance protein [Escherichia coli IAI39], gi\|2183... gi\|218703315, gi... - gi\|218703315\|ref\|YP_002410834.1\| organic solvent tolerance protein [Escherichia coli UMN026], gi\|218...	715.0	[0..2]	[761..4]
LPTD_SALCH - LPS-assembly protein lptD OS=Salmonella choleraesuis GN=lptD PE=3 SV=1 OSTA_SALCH - LPS-assembly protein OS=Salmonella choleraesuis GN=imp PE=3 SV=1 LPTD_SALCH - LPS-assembly protein LptD OS=Salmonella choleraesuis (strain SC-B67) GN=lptD PE=3 SV=1	714.0	[0..2]	[761..4]
LPTD_ECOUT - LPS-assembly protein LptD OS=Escherichia coli (strain UTI89 / UPEC) GN=lptD PE=3 SV=1 LPTD_ECOL6, OSTA... - LPS-assembly protein OS=Escherichia coli O6 GN=imp PE=3 SV=1, LPS-assembly protein lptD OS=Escherich... LPTD_ECOK1 - LPS-assembly protein LptD OS=Escherichia coli O1:K1 / APEC GN=lptD PE=3 SV=1 gi\|226902112, gi... - gi\|237704200\|ref\|ZP_04534681.1\| organic solvent tolerance protein [Escherichia sp. 3_2_53FAA], gi\|22... LPTD_ECOL6 - LPS-assembly protein LptD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=lptD PE=... gi\|227837874, gi... - gi\|227885045\|ref\|ZP_04002850.1\| organic solvent tolerance protein [Escherichia coli 83972], gi\|22783... gi\|218363764, gi... - gi\|218556995\|ref\|YP_002389908.1\| organic solvent tolerance protein [Escherichia coli S88], gi\|218363... gi\|218687932, gi... - gi\|218687932\|ref\|YP_002396144.1\| organic solvent tolerance protein [Escherichia coli ED1a], gi\|21842...	713.0	[0..2]	[761..4]
LPTD_ECOL5 - LPS-assembly protein LptD OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=lptD PE=3 SV=1	713.0	[0..2]	[761..4]

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Predicted Domain #1

Region A:
Residues: [1-765]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIRYLLALS LLPKLVLADE SPATSASQCL IEPPVPRIVS QPGLSAADQA KIRIASDRSK  60
   61 AEMGKQAIFT GDVVFSQGDR HIAADEAILD QATEQFDANG NLVFQDSNFT VTADSLQAQM 120
  121 RSNRATLTGA QYWLHGQQVH GDAEKLQITI NNNLILTNTN FTTCPPDNVS WLLEAEKIKI 180
  181 NSEEEWGEIW NAKLRVADIP VFYIPYMTVP VSDKRKTGFL YPSFSTSTTN GFEVSAPYYW 240
  241 NIAPEYDLTF TPNYMTNRGL FTKTEFRYLA GEAQNGRLNL EYLGSDQMLN GSPNRYLYNW 300
  301 QHQGAIDKNW RVLANFTEVS DNNYFNDLKS DVNRATDNQL SRIGEVSYFE RDWDISTRVQ 360
  361 DIKVLGEDEK PYQVMPQVNF NYRAADFWNN LDFGFNSELT NFAHQDDDVN TATRLHMAPS 420
  421 LTLPIHGPSG SFTSQLKLMQ TNYWQEKNNS KFDSLDDTVS RTIPQVRING QINFERFTEL 480
  481 FEHNYRQTLE PQFQYLYVGY EDQRGIGIYD TAQLQDDYFG LFRDRRFSGL DRIADANQVT 540
  541 LGITTRLFDD HNQEATKFSL GQIFYLQDSK LGYEDNIFEQ NQSTSVLAAE LDTRLSSNWY 600
  601 LGAAIQYDTN TSDNKKTEVT LDFRPEANKL LQFSYRYVPD LLNSNTNDLV NISQAGVRGA 660
  661 WPINDSLYFV GNWYYDLNET RSIETYTGVQ YESCCYAIRL SYHYRIKTNY DDNIGSTIID 720
  721 EREQFESGVY LNLIIKGLGG SGPLGVSDML NDGLFNYRKP LYLRN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.2
Match:	1qffA
Description:	Ferric hydroxamate uptake receptor FhuA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits