YRC Public Data Repository - Protein Structure Prediction

Protein:	PYRG_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	546 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PYRG_SHEON.

Description	E-value	Query Range	Subject Range
gi\|53728883 - gi\|53728883\|ref\|ZP_00134711.2\| COG0504: CTP synthase (UTP-ammonia lyase) [Actinobacillus pleuropneum...	807.0	[0..1]	[543..1]
PYRG_HAEDU - CTP synthase OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=pyrG PE=3 SV=1 PYRG_HAEDU - CTP synthase OS=Haemophilus ducreyi GN=pyrG PE=3 SV=1	803.0	[0..1]	[543..1]
PYRG_GEOKA - CTP synthase OS=Geobacillus kaustophilus GN=pyrG PE=3 SV=1 PYRG_GEOKA - CTP synthase OS=Geobacillus kaustophilus (strain HTA426) GN=pyrG PE=3 SV=1	802.0	[0..3]	[538..2]
PYRG_CARHZ - CTP synthase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=pyrG ...	794.0	[0..3]	[541..2]
gi\|95112164 - gi\|95112164\|emb\|CAK16891.1\| CTP synthase [Pseudomonas entomophila L48] PYRG_PSEE4 - CTP synthase OS=Pseudomonas entomophila (strain L48) GN=pyrG PE=3 SV=1	794.0	[0..3]	[542..2]
PYRG_PSEPK - CTP synthase OS=Pseudomonas putida (strain KT2440) GN=pyrG PE=3 SV=1 tr\|I7CC05\|I7CC05... - CTP synthase OS=Pseudomonas putida (strain DOT-T1E) GN=pyrG PE=3 SV=1 PYRG_PSEP1 - CTP synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=pyrG PE=3 SV=1	794.0	[0..3]	[542..2]
PYRG_ALKEH - CTP synthase OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) GN=pyrG PE=3 S...	793.0	[0..3]	[540..2]
PYRG_BACLD - CTP synthase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9...	792.0	[0..3]	[542..2]
gi\|146297554, gi... - gi\|82499007\|ref\|ZP_00884460.1\| CTP synthase [Caldicellulosiruptor saccharolyticus DSM 8903], gi\|8240...	791.0	[0..2]	[542..4]
PYRG_PSEPF - CTP synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=pyrG PE=3 SV=1	789.0	[0..3]	[542..2]

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Predicted Domain #1

Region A:
Residues: [1-546]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTRYIFVTG GVVSSLGKGI AAASLAAILE ARGLNVTIMK LDPYINVDPG TMSPTQHGEV  60
   61 FVTEDGAETD LDLGHYERFI RTKMNRRNNF TTGRIYEEVL RKERRGDYLG ATIQVIPHIT 120
  121 NAIKEKVLAG GEGHDVAIVE IGGTVGDIES LPFLESIRQL GVELGRDRTL FMHLTLVPFL 180
  181 GAAGEVKTKP TQHSVKELRS IGIAPDVLIC RGDRAIPANE RAKISLFCNV EERAVISLKD 240
  241 VDSIYKIPAL LRSQGLDELV VKRFSLTCRE ADLSEWENVI YQEANPNGEV VIGMVGKYIE 300
  301 LPDAYKSVNE ALKHAGLKNR VSVTIKYIDS QTVEAKGDEV LQGLDGILVP GGFGERGVEG 360
  361 KILAAKFARE NNLPYFGICL GMQVALIEFA RNVAGMADAH STEFNKATPF PVVGLITEWV 420
  421 DEEGNVEQRH EASDLGGTMR LGAQLCHLLE GSKAAQAYKG NSCVERHRHR YEVNNKYKER 480
  481 LEQAGLVFSG LSSDRKLVEM IELKDHPWFV AGQFHPEFTS TPRDGHPLFE GFVAAASAHQ 540
  541 KRDLKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1s1mA
Description:	Crystal Structure of E. Coli CTP Synthetase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits