YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349652, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	418 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349652, gi|....

Description	E-value	Query Range	Subject Range
gi\|83647874, gi\|... - gi\|83647874\|ref\|YP_436309.1\| aspartate kinase [Hahella chejuensis KCTC 2396], gi\|83635917\|gb\|ABC3188...	378.0	[0..11]	[417..2]
gi\|95111859 - gi\|95111859\|emb\|CAK16583.1\| aspartate kinase, monofunctional class [Pseudomonas entomophila L48] gi\|104782872, gi... - gi\|95111859\|emb\|CAK16583.1\| aspartate kinase, monofunctional class [Pseudomonas entomophila L48], gi...	371.0	[0..11]	[416..2]
gi\|53611496, gi\|... - gi\|67155199\|ref\|ZP_00416827.1\| Aspartate kinase:Aspartate kinase, monofunctional class [Azotobacter ... gi\|226720423, gi... - gi\|67155199\|ref\|ZP_00416827.1\| Aspartate kinase:Aspartate kinase, monofunctional class [Azotobacter ...	369.0	[0..11]	[416..2]
gi\|63257491, gi\|... - gi\|66046784\|ref\|YP_236625.1\| aspartate kinase [Pseudomonas syringae pv. syringae B728a], gi\|63257491...	366.0	[0..11]	[416..2]
gi\|28869048, gi\|... - gi\|28869048\|ref\|NP_791667.1\| aspartate kinase [Pseudomonas syringae pv. tomato str. DC3000], gi\|2885... gi\|213968622, gi... - gi\|213968622\|ref\|ZP_03396764.1\| aspartate kinase, monofunctional class [Pseudomonas syringae pv. tom... tr\|Q885I9\|Q885I9... - Aspartokinase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_1843 PE=3 SV=1	366.0	[0..11]	[416..2]
gi\|91774922, gi\|... - gi\|91774922\|ref\|YP_544678.1\| aspartate kinase [Methylobacillus flagellatus KT], gi\|91708909\|gb\|ABE48...	366.0	[0..11]	[418..2]
gi\|71558081, gi\|... - gi\|71737528\|ref\|YP_275659.1\| aspartate kinase [Pseudomonas syringae pv. phaseolicola 1448A], gi\|7155...	365.0	[0..11]	[416..2]
gi\|218773355, gi... - gi\|218893127\|ref\|YP_002441996.1\| aspartate kinase [Pseudomonas aeruginosa LESB58], gi\|218773355\|emb\|... gi\|107100362 - gi\|107100362\|ref\|ZP_01364280.1\| hypothetical protein PaerPA_01001387 [Pseudomonas aeruginosa PACS2] AK_PSEAE - Aspartokinase OS=Pseudomonas aeruginosa GN=lysC PE=3 SV=2 gi\|53727397, gi\|... - gi\|53727397\|ref\|ZP_00138501.2\| COG0527: Aspartokinases [Pseudomonas aeruginosa UCBPP-PA14], gi\|11604... AK_PSEAE - Aspartokinase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=lys... gi\|84316674, gi\|... - gi\|84316674\|ref\|ZP_00965146.1\| COG0527: Aspartokinases [Pseudomonas aeruginosa C3719], gi\|254239256\|... gi\|194556175, gi... - gi\|84322487\|ref\|ZP_00970572.1\| COG0527: Aspartokinases [Pseudomonas aeruginosa 2192], gi\|254245190\|r...	365.0	[0..11]	[416..2]
gi\|90197588, gi\|... - gi\|90203941\|ref\|ZP_01206586.1\| Aspartate kinase region:Aspartate kinase, monofunctional class [Mycob...	365.0	[0..5]	[415..53]
gi\|152983613, gi... - gi\|94417995\|ref\|ZP_01297811.1\| hypothetical protein PaerP_01000144 [Pseudomonas aeruginosa PA7], gi\|...	364.0	[0..11]	[416..2]

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Predicted Domain #1

Region A:
Residues: [1-418]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEKRKLSGS KLFVKKFGGT SVGSIERIEV VAEQIAKSAH SGEQQVLVLS AMAGETNRLF  60
   61 ALAAQIDPRA SARELDMLVS TGEQISIALM AMALQRRGIK ARSLTGDQVQ IHTNSQFGRA 120
  121 SIESVDTAYL TSLLEQGIVP IVAGFQGIDP NGDVTTLGRG GSDTTAVALA AALRADECQI 180
  181 FTDVSGVFTT DPNIDSSARR LDVIGFDVML EMAKLGAKVL HPDSVEYAQR FKVPLRVLSS 240
  241 FEAGQGTLIQ FGDESELAMA ASVQGIAINK ALATLTIEGL FTSSERYQAL LACLARLEVD 300
  301 VEFITPLKLN EISPVESVSF MLAEAKVDIL LHELEVLSES LDLGQLIVER QRAKVSLVGK 360
  361 GLQAKVGLLT KMLDVLGNET IHAKLLSTSE SKLSTVIDER DLHKAVRALH HAFELNKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.045757
Match:	2hmfA
Description:	No description for 2hmfA was found.

Predicted functions:

Term	Confidence	Notes
aspartate kinase activity	3.39058614295645	bayes_pls_golite062009
phosphotransferase activity, carboxyl group as acceptor	3.23203925555954	bayes_pls_golite062009
amino acid kinase activity	2.69040298093296	bayes_pls_golite062009
acetolactate synthase activity	2.58771218094881	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.89315414622708	bayes_pls_golite062009
kinase activity	1.84529070582231	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	1.7506777126472	bayes_pls_golite062009
acetylglutamate kinase activity	1.45784525332691	bayes_pls_golite062009
catalytic activity	1.01569611874813	bayes_pls_golite062009
glutamate 5-kinase activity	0.537497646385449	bayes_pls_golite062009
transferase activity	0.07375530569672	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: