YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374933, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374933, gi|....

Description	E-value	Query Range	Subject Range
gi\|112823450, gi... - gi\|23467212\|ref\|ZP_00122796.1\| COG2927: DNA polymerase III, chi subunit [Haemophilus somnus 129PT], ...	201.0	[0..1]	[146..2]
gi\|113888150, gi... - gi\|78692276\|ref\|ZP_00856829.1\| DNA polymerase III, chi subunit [Shewanella sp. MR-7], gi\|78508321\|gb...	200.0	[0..1]	[153..1]
gi\|168827096, gi... - gi\|46156228\|ref\|ZP_00133222.2\| COG2927: DNA polymerase III, chi subunit [Haemophilus somnus 2336], g...	200.0	[0..1]	[146..2]
gi\|117611913, gi... - gi\|78688404\|ref\|ZP_00853097.1\| DNA polymerase III, chi subunit [Shewanella sp. ANA-3], gi\|78503860\|g...	199.0	[0..1]	[153..1]
gi\|82498306, gi\|... - gi\|82498306\|ref\|ZP_00883811.1\| DNA polymerase III, chi subunit [Shewanella sp. MR-4], gi\|82403710\|gb...	198.0	[0..1]	[153..1]
gi\|36787741, gi\|... - gi\|37528303\|ref\|NP_931648.1\| DNA polymerase III subunit chi [Photorhabdus luminescens subsp. laumond...	195.0	[0..1]	[151..1]
gi\|21957466, gi\|... - gi\|22124657\|ref\|NP_668080.1\| DNA polymerase III subunit chi [Yersinia pestis KIM], gi\|21957466\|gb\|AA...	195.0	[0..1]	[152..10]
gi\|229839086, gi... - gi\|229839086\|ref\|ZP_04459245.1\| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis s... gi\|229700352, gi... - gi\|229896574\|ref\|ZP_04511741.1\| DNA polymerase III, chi subunit [Yersinia pestis Pestoides A], gi\|22... gi\|229899649, gi... - gi\|229899649\|ref\|ZP_04514790.1\| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis s... gi\|166204515, gi... - gi\|166214283\|ref\|ZP_02240318.1\| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua str.... gi\|165990995, gi... - gi\|166010088\|ref\|ZP_02230986.1\| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua str.... gi\|167420797, gi... - gi\|167420797\|ref\|ZP_02312550.1\| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis s... gi\|162419828, gi... - gi\|77634909\|ref\|ZP_00797001.1\| COG2927: DNA polymerase III, chi subunit [Yersinia pestis Angola], gi... gi\|167051886, gi... - gi\|167399382\|ref\|ZP_02304906.1\| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua str.... gi\|153948188, gi... - gi\|77631525\|ref\|ZP_00794111.1\| COG2927: DNA polymerase III, chi subunit [Yersinia pseudotuberculosis... gi\|167470533 - gi\|167470533\|ref\|ZP_02335237.1\| DNA polymerase III subunit chi [Yersinia pestis FV-1] gi\|167423580, gi... - gi\|167423580\|ref\|ZP_02315333.1\| DNA polymerase III, chi subunit [Yersinia pestis biovar Mediaevalis ... Q66F10\|Q66F10_YERPS - DNA polymerase III, chi subunit - Yersinia pseudotuberculosis gi\|186696918, gi... - gi\|186893892\|ref\|YP_001871004.1\| DNA polymerase III subunit chi [Yersinia pseudotuberculosis PB1/+],... gi\|170025895, gi... - gi\|170025895\|ref\|YP_001722400.1\| DNA polymerase III subunit chi [Yersinia pseudotuberculosis YPIII],... gi\|165922444, gi... - gi\|165925832\|ref\|ZP_02221664.1\| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis s... gi\|89102509, gi\|... - gi\|89102509\|ref\|ZP_01175137.1\| COG2927: DNA polymerase III, chi subunit [Yersinia pestis biovar Orie... gi\|153997516, gi... - gi\|153997516\|ref\|ZP_02022616.1\| DNA polymerase III, chi subunit [Yersinia pestis CA88-4125], gi\|1492... gi\|108780847, gi... - gi\|108808934\|ref\|YP_652850.1\| DNA polymerase III subunit chi [Yersinia pestis Antiqua], gi\|108780847... gi\|145600506, gi... - gi\|145600506\|ref\|YP_001164582.1\| DNA polymerase III subunit chi [Yersinia pestis Pestoides F], gi\|14... gi\|108810811, gi... - gi\|229901014\|ref\|ZP_04516138.1\| DNA polymerase III, chi subunit [Yersinia pestis Nepal516], gi\|22968... gi\|25355626 - pir\|\|AD0418 DNA-directed DNA polymerase (EC 2.7.7.7) chi chain [imported] - Yersinia pestis (strain ... gi\|51588164, gi\|... - gi\|51594882\|ref\|YP_069073.1\| DNA polymerase III subunit chi [Yersinia pseudotuberculosis IP 32953], ... gi\|45435351, gi\|... - gi\|45440494\|ref\|NP_992033.1\| DNA polymerase III subunit chi [Yersinia pestis biovar Microtus str. 91... gi\|123440872, gi... - gi\|123440872\|ref\|YP_001004863.1\| DNA polymerase III subunit chi [Yersinia enterocolitica subsp. ente... gi\|16123590, gi\|... - gi\|218930458\|ref\|YP_002348333.1\| DNA polymerase III subunit chi [Yersinia pestis CO92], gi\|16123590\|...	194.0	[0..1]	[152..1]
gi\|169891533, gi... - gi\|170083698\|ref\|YP_001733018.1\| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr.... gi\|238860832, gi... - gi\|238903360\|ref\|YP_002929156.1\| DNA polymerase III, chi subunit [Escherichia coli BW2952], gi\|23886... HOLC_ECOLI - DNA polymerase III subunit chi (EC 2.7.7.7) - Escherichia coli gi\|89110975, gi\|... - gi\|89110975\|ref\|AP_004755.1\| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr. W31... EG11413 - DNA polymerase III, chi subunit / DNA polymerase III, chi subunit EG11413 - DNA polymerase III, chi subunit / DNA polymerase III, chi subunit	193.0	[0..1]	[143..1]
gi\|238793059, gi... - gi\|77978581\|ref\|ZP_00834008.1\| COG2927: DNA polymerase III, chi subunit [Yersinia intermedia ATCC 29...	193.0	[0..1]	[152..1]

Back

Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQALFYLMP PTGENTALSD LYQLACRLSQ RAFIDQQQVY IHCQDKNVAF EIDELLWQFD  60
   61 PSAFVPHNLK GEGPTTGSPV EIGFDRLGPN KSRQLLINLA DQVPPFAVNF GQIFDFVAND 120
  121 DQHKVIARER YRQYRGLGIE LTTQNLATHP LNLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	1em8A
Description:	Crystal structure of chi and psi subunit heterodimer from DNA POL III
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA-directed DNA polymerase activity	10.5323303172282	bayes_pls_golite062009
DNA polymerase activity	10.4830348241445	bayes_pls_golite062009
nucleotidyltransferase activity	7.90238563893338	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	3.96930833729486	bayes_pls_golite062009
transferase activity	3.35643625144672	bayes_pls_golite062009
exonuclease activity	1.41483511359931	bayes_pls_golite062009
catalytic activity	1.13824203225664	bayes_pls_golite062009
5'-3' exonuclease activity	0.602142505358069	bayes_pls_golite062009
nuclease activity	0.0887585005803604	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: