YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349416, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	384 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349416, gi|....

Description	E-value	Query Range	Subject Range
gi\|113969611, gi... - gi\|82495224\|ref\|ZP_00880801.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella sp....	326.0	[0..1]	[384..1]
gi\|114046843, gi... - gi\|78689562\|ref\|ZP_00854222.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella sp....	326.0	[0..1]	[384..1]
gi\|77810896, gi\|... - gi\|77814151\|ref\|ZP_00813417.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella put... gi\|124546481, gi... - gi\|124546481\|ref\|ZP_01705557.1\| flagellar rod assembly protein/muramidase FlgJ [Shewanella putrefaci...	318.0	[0..1]	[384..1]
gi\|68520773, gi\|... - gi\|68541512\|ref\|ZP_00581255.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella bal...	317.0	[0..1]	[384..1]
gi\|113909402, gi... - gi\|160876198\|ref\|YP_001555514.1\| peptidoglycan hydrolase [Shewanella baltica OS195], gi\|160861720\|gb...	316.0	[0..1]	[384..1]
gi\|120598237, gi... - gi\|82741811\|ref\|ZP_00904523.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella sp....	316.0	[0..1]	[384..1]
gi\|117612109, gi... - gi\|78686549\|ref\|ZP_00851315.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella sp....	304.0	[0..1]	[384..1]
gi\|194545206, gi... - gi\|84322077\|ref\|ZP_00970422.1\| COG1705: Muramidase (flagellum-specific) [Pseudomonas aeruginosa C371... gi\|194550428, gi... - gi\|84328547\|ref\|ZP_00976551.1\| COG1705: Muramidase (flagellum-specific) [Pseudomonas aeruginosa 2192...	286.0	[0..5]	[381..13]
gi\|218773179, gi... - gi\|218892951\|ref\|YP_002441820.1\| flagellar rod assembly protein/muramidase FlgJ [Pseudomonas aerugin... gi\|107100530 - gi\|107100530\|ref\|ZP_01364448.1\| hypothetical protein PaerPA_01001555 [Pseudomonas aeruginosa PACS2] gi\|116049014, gi... - gi\|32041090\|ref\|ZP_00138673.1\| COG1705: Muramidase (flagellum-specific) [Pseudomonas aeruginosa UCBP...	284.0	[0..5]	[381..13]
FLGJ_PSEAE - Peptidoglycan hydrolase FlgJ OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LM... FLGJ_PSEAE - Peptidoglycan hydrolase flgJ OS=Pseudomonas aeruginosa GN=flgJ PE=3 SV=1	283.0	[0..5]	[381..13]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLSSSSHF LDLGGLDNLR AQAQKDEKGA LKKVAQQFEG VFVQMLMKSM RDANAVFESD  60
   61 SPLNSQYTKF YEQMRDQQLS VDLSDKGVLG LADMMVQQLS PESSPFTPAS VLRND

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.969	0.032	flagellum assembly	a.71.2	Helical domain of Sec23/24

Predicted Domain #2

Region A:
Residues: [116-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGMKLEHDAK ALNIPTQTPS TAEAESANTP VVVAHGVPAS IARPSVEFED NNGVTSSLDI  60
   61 DRPQRLLAID TPKPT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [191-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WSEQPLSAIE PVISGQILPT VAFRETQKTL KFGSREEFLA TLYPHAEKAA KALGTKPEVL  60
   61 LAQSALETGW GQKIVRGHNG APSHNLFNIK ADRRWQGDKA NVSTLEFEQG IAVRQKADFR 120
  121 VYNDFDHSFN DFVSFIADGE RYQDAKKVAA SPTQFIRALQ EAGYATDPKY AEKVIKVMQS 180
  181 ISEELKSILP GEDK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.130768
Match:	PF01832.11
Description:	No description for PF01832.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits