YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374739, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374739, gi|....

Description	E-value	Query Range	Subject Range
gi\|125972987, gi... - gi\|67875411\|ref\|ZP_00504751.1\| Flagellar motor switch protein FliG [Clostridium thermocellum ATCC 27...	414.0	[0..18]	[348..9]
gi\|77381767, gi\|... - gi\|77457764\|ref\|YP_347269.1\| flagellar motor switch protein G [Pseudomonas fluorescens Pf0-1], gi\|77...	409.0	[0..17]	[348..8]
gi\|152987829, gi... - gi\|94415966\|ref\|ZP_01295798.1\| hypothetical protein PaerP_01002295 [Pseudomonas aeruginosa PA7], gi\|...	407.0	[0..12]	[348..2]
gi\|84322094, gi\|... - gi\|84322094\|ref\|ZP_00970439.1\| COG1536: Flagellar motor switch protein [Pseudomonas aeruginosa C3719... gi\|254239471, gi... - gi\|84328574\|ref\|ZP_00976578.1\| COG1536: Flagellar motor switch protein [Pseudomonas aeruginosa 2192]... gi\|218892934, gi... - gi\|218892934\|ref\|YP_002441803.1\| flagellar motor switch protein G [Pseudomonas aeruginosa LESB58], g... FLIG_PSEAE - Flagellar motor switch protein fliG OS=Pseudomonas aeruginosa GN=fliG PE=3 SV=2 gi\|107100553 - gi\|107100553\|ref\|ZP_01364471.1\| hypothetical protein PaerPA_01001578 [Pseudomonas aeruginosa PACS2] gi\|116049031, gi... - gi\|32041107\|ref\|ZP_00138690.1\| COG1536: Flagellar motor switch protein [Pseudomonas aeruginosa UCBPP... FLIG_PSEAE - Flagellar motor switch protein FliG OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 1...	407.0	[0..12]	[348..2]
gi\|70729031, gi\|... - gi\|70729031\|ref\|YP_258765.1\| flagellar motor switch protein G [Pseudomonas fluorescens Pf-5], gi\|683...	407.0	[0..17]	[348..8]
gi\|95111807 - gi\|95111807\|emb\|CAK16531.1\| flagellar biosynthesis; component of motor switching and energizing FliG... gi\|104782820, gi... - gi\|95111807\|emb\|CAK16531.1\| flagellar biosynthesis; component of motor switching and energizing FliG...	402.0	[0..17]	[348..8]
gi\|28869163, gi\|... - gi\|28869163\|ref\|NP_791782.1\| flagellar motor protein [Pseudomonas syringae pv. tomato str. DC3000], ... gi\|213927861, gi... - gi\|213967560\|ref\|ZP_03395708.1\| flagellar motor switch protein G [Pseudomonas syringae pv. tomato T1... tr\|Q884X7\|Q884X7... - Flagellar motor switch protein FliG OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=fliG PE=3 ... gi\|71555805, gi\|... - gi\|71735252\|ref\|YP_275540.1\| flagellar motor switch protein G [Pseudomonas syringae pv. phaseolicola...	402.0	[0..17]	[348..2]
gi\|148546738, gi... - gi\|82738783\|ref\|ZP_00901608.1\| Flagellar motor switch protein FliG [Pseudomonas putida F1], gi\|82714...	401.0	[0..17]	[348..8]
gi\|63257392, gi\|... - gi\|66046685\|ref\|YP_236526.1\| flagellar motor switch protein G [Pseudomonas syringae pv. syringae B72...	400.0	[0..17]	[348..7]
gi\|23099011, gi\|... - gi\|23099011\|ref\|NP_692477.1\| flagellar motor switch protein G [Oceanobacillus iheyensis HTE831], gi\|...	396.0	[0..20]	[348..8]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENKSKDAA ETPSFNVKDL SGIEKTAILL LSLSEADAAS ILKHLEPKQV QKVGMAMAAM  60
   61 EDFGQEKVIG VHKLFLDDIQ KYSSIGFNSE EFVRKALTAA LGEDKAGNLI EQIIMGS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.55
Match:	1lkvX
Description:	FliG
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [118-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAKGLDSLKW MDARQVATII QNEHPQIQTI VLSYLEPDQA AEIFGQFPEN TRLDLMMRIA  60
   61 NLEEVQPAAL QELNDIMEKQ FAGQGGAQAA KMGGLKAAAN IMNYLDTGVE SQLMETMRET 120
  121 DEEMAQQIQD LMFVFENLID VDDRGIQTLL REVQQDVLMK ALKGADDQLK DKILGNMSKR 180
  181 AAELLRDDLE AMGPIRISEV EIAQKEILSI ARRLSDSGEI MLGGGGGDEF L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.69897
Match:	1lkvX
Description:	FliG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits