YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349391, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349391, gi|....

Description	E-value	Query Range	Subject Range
gi\|124871415, gi... - gi\|84356432\|ref\|ZP_00981279.1\| COG3190: Flagellar biogenesis protein [Burkholderia cenocepacia PC184...	119.0	[0..11]	[114..32]
gi\|74017650, gi\|... - gi\|74017650\|ref\|ZP_00688273.1\| Flagellar biosynthesis protein, FliO [Burkholderia ambifaria AMMD], g...	115.0	[0..11]	[125..33]
gi\|77965444, gi\|... - gi\|78064699\|ref\|YP_367468.1\| flagellar biosynthesis protein, FliO [Burkholderia sp. 383], gi\|7796544...	113.0	[0..11]	[127..33]
gi\|116688062, gi... - gi\|67667199\|ref\|ZP_00464429.1\| Flagellar biosynthesis protein, FliO [Burkholderia cenocepacia HI2424... gi\|67657423, gi\|... - gi\|67657423\|ref\|ZP_00454801.1\| Flagellar biosynthesis protein, FliO [Burkholderia cenocepacia AU 105...	113.0	[0..11]	[113..32]
gi\|254184094, gi... - gi\|99913454\|ref\|ZP_01320103.1\| hypothetical protein Bpse1_03000622 [Burkholderia pseudomallei 1655],...	113.0	[0..11]	[115..55]
gi\|67755108, gi\|... - gi\|67755108\|ref\|ZP_00494007.1\| COG3190: Flagellar biogenesis protein [Burkholderia pseudomallei Past... gi\|194518001, gi... - gi\|67760064\|ref\|ZP_00498790.1\| COG3190: Flagellar biogenesis protein [Burkholderia pseudomallei S13]... gi\|217423832, gi... - gi\|217423832\|ref\|ZP_03455332.1\| flagellar biosynthesis protein FliO [Burkholderia pseudomallei 576],...	113.0	[0..11]	[115..55]
gi\|83676803, gi\|... - gi\|83676803\|ref\|ZP_00938573.1\| COG3190: Flagellar biogenesis protein [Burkholderia pseudomallei 406e... gi\|254217292, gi... - gi\|90291125\|ref\|ZP_01210759.1\| hypothetical protein Bpse17_02004195 [Burkholderia pseudomallei 1710a... gi\|76581209, gi\|... - gi\|76811756\|ref\|YP_331658.1\| flagellar protein FliO [Burkholderia pseudomallei 1710b], gi\|76581209\|g... gi\|194528231, gi... - gi\|254206699\|ref\|ZP_04913050.1\| flagellar protein FliO [Burkholderia mallei JHU], gi\|194528231\|ref\|Y... gi\|194523241, gi... - gi\|254201357\|ref\|ZP_04907721.1\| flagellar protein FliO [Burkholderia mallei FMH], gi\|194523241\|ref\|Y... gi\|134247019, gi... - gi\|134281352\|ref\|ZP_01768060.1\| flagellar biosynthesis protein FliO [Burkholderia pseudomallei 305],... gi\|121598394, gi... - gi\|121598394\|ref\|YP_994773.1\| flagellar protein FliO [Burkholderia mallei SAVP1], gi\|121227204\|gb\|AB... gi\|254174757, gi... - gi\|254174757\|ref\|ZP_04881418.1\| flagellar protein FliO [Burkholderia mallei ATCC 10399], gi\|19431664... gi\|225934871, gi... - gi\|226193271\|ref\|ZP_03788881.1\| flagellar biosynthesis protein FliO [Burkholderia pseudomallei Pakis... gi\|238562287, gi... - gi\|238562287\|ref\|ZP_00440667.2\| flagellar biosynthetic protein FliO [Burkholderia mallei GB8 horse 4... gi\|243063642, gi... - gi\|243063642\|gb\|EES45828.1\| flagellar biosynthetic protein FliO [Burkholderia mallei PRL-20], gi\|167... gi\|237814424, gi... - gi\|237814424\|ref\|YP_002898875.1\| flagellar protein FliO [Burkholderia pseudomallei MSHR346], gi\|2375...	112.0	[0..11]	[115..55]
gi\|134137328, gi... - gi\|67546874\|ref\|ZP_00424783.1\| Flagellar biosynthesis protein, FliO [Burkholderia vietnamiensis G4],...	112.0	[0..13]	[115..34]
gi\|194562018, gi... - gi\|84363321\|ref\|ZP_00987911.1\| COG3190: Flagellar biogenesis protein [Burkholderia dolosa AUO158], g...	110.0	[0..13]	[115..36]
gi\|90662065, gi\|... - gi\|90662065\|ref\|ZP_01249901.1\| hypothetical protein Bpse110_02006042 [Burkholderia pseudomallei 1106... gi\|82532522 - gi\|82532522\|ref\|ZP_00891733.1\| COG3190: Flagellar biogenesis protein [Burkholderia pseudomallei 1106...	110.0	[0..11]	[115..13]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSVILSLV SATQASVAGI ANEGSAATAK ITEPSQMAAA ASMLGGLILV LLLIFALAYL  60
   61 LRRFNLVPTN HSVLKTLAVT SLGQKERLVL VQVGEQQYLL GVSGQQVNLI DKLAQPIQIE 120
  121 SVSFADKLRQ AKLKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.05061
Match:	PF04347.4
Description:	No description for PF04347.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits