YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374729, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374729, gi|....

Description	E-value	Query Range	Subject Range
gi\|39545584 - gi\|39545584\|gb\|AAR27891.1\| AscS [Aeromonas hydrophila]	87.0	[0..1]	[87..18]
gi\|167040313, gi... - gi\|167040313\|ref\|YP_001663298.1\| flagellar biosynthesis protein FliQ [Thermoanaerobacter sp. X514], ... gi\|242231911, gi... - gi\|242256538\|ref\|ZP_04801427.1\| flagellar biosynthetic protein FliQ [Thermoanaerobacter sp. X513], g...	85.0	[0..1]	[88..1]
gi\|17430843 - gi\|17430843\|emb\|CAD17525.1\| probable flagellar biosynthetic fliq transmembrane protein [Ralstonia so... gi\|17548595 - gi\|17548595\|ref\|NP_521935.1\| flagellar biosynthesis protein FliQ [Ralstonia solanacearum GMI1000]	84.0	[0..1]	[88..1]
gi\|20807872, gi\|... - gi\|20807872\|ref\|NP_623043.1\| flagellar biosynthesis protein FliQ [Thermoanaerobacter tengcongensis M... gi\|20807872 - gi\|20807872\|ref\|NP_623043.1\| flagellar biosynthesis protein [Thermoanaerobacter tengcongensis MB4]	84.0	[0..1]	[88..1]
gi\|23476205, gi\|... - gi\|78358621\|ref\|YP_390070.1\| flagellar biosynthetic protein FliQ [Desulfovibrio desulfuricans subsp....	82.0	[0..1]	[88..1]
FLIQ_BUCBP - Flagellar biosynthetic protein fliQ OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=fliQ PE=3 S... FLIQ_BUCBP - Flagellar biosynthetic protein FliQ OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN...	82.0	[0..1]	[84..1]
gi\|108757472, gi... - gi\|108757472\|ref\|YP_630668.1\| FliQ/MopD/SpaQ family protein [Myxococcus xanthus DK 1622], gi\|1084613...	82.0	[0..6]	[88..4]
gi\|110550025, gi... - gi\|222053617\|ref\|YP_002535979.1\| flagellar biosynthetic protein FliQ [Geobacter sp. FRC-32], gi\|2215...	82.0	[0..1]	[87..1]
gi\|94415014 - gi\|94415014\|ref\|ZP_01294863.1\| hypothetical protein PaerP_01003122 [Pseudomonas aeruginosa PA7]	82.0	[0..1]	[89..8]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPEALIDIF REALAVIVMM VSAIVLPGLG IGLIVAVFQA ATSINEQTLS FLPRLIVTLL  60
   61 ALMLMGHWLV QTLMDFFIEM VNRIPQVIG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.008774
Match:	PF01313.10
Description:	No description for PF01313.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits