YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374694, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	501 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374694, gi|....

Description	E-value	Query Range	Subject Range
gi\|113548993, gi... - gi\|115453843\|ref\|NP_001050522.1\| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi\|113548993...	227.0	[0..1]	[427..648]
gi\|42551894, gi\|... - gi\|46123591\|ref\|XP_386349.1\| hypothetical protein FG06173.1 [Gibberella zeae PH-1], gi\|42551894\|gb\|E...	213.0	[0..2]	[412..677]
gi\|7487825, gi\|7... - pir\|\|T05472 hypothetical protein T8O5.110 - Arabidopsis thaliana, gi\|7269035\|emb\|CAB79145.1\| putati...	199.0	[0..19]	[427..1]
gi\|38105054, gi\|... - gi\|39942086\|ref\|XP_360580.1\| hypothetical protein MG03123.4 [Magnaporthe grisea 70-15], gb\|EAA51528....	197.0	[0..2]	[427..295]
gi\|111153730, gi... - gi\|111226198\|ref\|YP_716992.1\| hypothetical protein FRAAL6865 [Frankia alni ACN14a], gi\|111153730\|emb...	195.0	[0..6]	[493..616]
gi\|68197777, gi\|... - gi\|68234608\|ref\|ZP_00573679.1\| Virulence factor MVIN-like [Frankia sp. EAN1pec], gi\|68197777\|gb\|EAN1...	185.0	[0..2]	[394..1450]
gi\|50758312 - gi\|50758312\|ref\|XP_415860.1\| PREDICTED: similar to 1300013J15Rik protein [Gallus gallus]	183.0	[0..2]	[429..81]
gi\|30047775 - gi\|30047775\|gb\|AAH50592.1\| SLC47A1 protein [Homo sapiens]	182.0	[0..2]	[429..58]
gi\|60470273 - gi\|60470273\|gb\|EAL68253.1\| hypothetical protein DDB0204470 [Dictyostelium discoideum] gi\|66816329, gi\|... - gi\|66816329\|ref\|XP_642174.1\| multi antimicrobial extrusion (MatE) family protein [Dictyostelium disc...	179.0	[0..1]	[427..31]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRQNIVASY FSQAYVTLIG IVILPLYIKF MGAEAYGLIG FFTLLQAWFS LLDLGLTPTI  60
   61 ARETSRFQSG VLSKLKFKQL YRALSAIFLI IALIGGLCLF YLSDLITNKW LNFNELDDNI 120
  121 VQICVQIMAI SVAFRWMGGV YRGVITGSES IVWLSSFNAI IATIRFIGVF VSMYIFGFTA 180
  181 YVFFVHQLAV AILEFIILFF KAEKIIPRRK DFTEDI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [217-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GWSFEPIRSI LSFALTIAFT SSVWVFVTQT DKLLLSGLLP LAEYGYFTLA VLVASAIMVA  60
   61 SGPISNALMP RMVKLYAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [295-501]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKKDEMLDIY RKATQVVTVI AIPVTTTFVF SAKPLLIAWT GDVLIAEKAS PILQLYAIGN  60
   61 GFLVLAAFPF YLQYAIGSLK YHFLGNILIF VILMPSIYFA ASNYGGIGAA WVWLLLNAFM 120
  121 FFFWVSYVHQ KLFKGLHIIW LLRDVLSIAL PTLMVCYLVS LTSVDLITKF HNLVYTISFA 180
  181 FIGFVVALLA SSNARNFIMS RVKNDLE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits