YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374686, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374686, gi|....

Description	E-value	Query Range	Subject Range
gi\|41205692 - gi\|41205692\|gb\|AAR99612.1\| dTDP-glucose 4,6-dehydratase [Geobacillus stearothermophilus]	302.0	[0..4]	[308..3]
gi\|7437238 - pir\|\|H69105 dTDP-glucose 4,6-dehydratase - Methanobacterium thermoautotrophicum (strain Delta H) gi\|15679777, gi\|... - gi\|2622920\|gb\|AAB86255.1\| dTDP-glucose 4,6-dehydratase [Methanothermobacter thermautotrophicus str. ...	295.0	[0..5]	[308..3]
gi\|33413324, gi\|... - gi\|33413324\|emb\|CAD67949.1\| putative dTDP-glucose 4,6-dehydratase [Thermotoga sp. RQ2], gi\|170288108...	290.0	[0..4]	[308..1]
gi\|110644114, gi... - gi\|110644114\|ref\|YP_671844.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli 536], gi\|110345706\|gb\|A... gi\|75236365, gi\|... - gi\|75236365\|ref\|ZP_00720465.1\| COG1088: dTDP-D-glucose 4,6-dehydratase [Escherichia coli F11], gi\|19...	289.0	[0..4]	[308..2]
gi\|75230753, gi\|... - gi\|75230753\|ref\|ZP_00717216.1\| COG1088: dTDP-D-glucose 4,6-dehydratase [Escherichia coli B7A], gi\|19... gi\|157155600, gi... - gi\|75188534\|ref\|ZP_00701801.1\| COG1088: dTDP-D-glucose 4,6-dehydratase [Escherichia coli E24377A], g...	289.0	[0..4]	[308..2]
gi\|91213310, gi\|... - gi\|91213310\|ref\|YP_543296.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli UTI89], gi\|91074884\|gb\|A... gi\|117626048, gi... - gi\|117626048\|ref\|YP_859371.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli APEC O1], gi\|115515172\|... gi\|237702798, gi... - gi\|237702798\|ref\|ZP_04533279.1\| dTDP-glucose 4,6-dehydratase [Escherichia sp. 3_2_53FAA], gi\|2269029... gi\|218367623, gi... - gi\|218560854\|ref\|YP_002393767.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli S88], gi\|218367623\|e...	289.0	[0..4]	[308..2]
gi\|16357461 - gi\|16357461\|gb\|AAL18013.1\| dTDP-glucose 4,6-dehydratase [Aneurinibacillus thermoaerophilus]	289.0	[0..4]	[308..1]
gi\|73857780, gi\|... - gi\|74314303\|ref\|YP_312722.1\| dTDP-glucose 4,6-dehydratase [Shigella sonnei Ss046], gi\|73857780\|gb\|AA...	289.0	[0..4]	[308..2]
gi\|49529344, gi\|... - gi\|50083368\|ref\|YP_044878.1\| dTDP-D-glucose-4,6-dehydratase [Acinetobacter sp. ADP1], gi\|49529344\|em...	288.0	[0..4]	[308..2]
gi\|227888628, gi... - gi\|227888628\|ref\|ZP_04006433.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli 83972], gi\|227834467\|... gi\|26250527, gi\|... - gi\|26250527\|ref\|NP_756567.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli CFT073], gi\|26110957\|gb\|...	288.0	[0..4]	[308..2]

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Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTQSILLTG ATGFVGQQIL RQLPQDTRVF GRTKPARDCH FFAGELTANT DYRSALSGVD  60
   61 VVIHCAARAH VMNETANNAA QLYQEVNTLV TLALAEQAAA AGVKRFIFIS TIKVNGEATI 120
  121 AGQLFRASDA RQPLDHYGES KAKAEIGLFD IARKTEIEVV IIRPPLVYGP NVKANFATML 180
  181 NLAKKNLPLP FGAIHNKRSM VALDNLVDLI VTCIEHPNAA NQIFLVSDDQ DVSTTELLKL 240
  241 MTGAAGKKPR LLPVPMAWLI LAGKVTGNQA IIDRLCGNLQ VDITHTKNTL SWQPPITVEE 300
  301 GVRRCFVKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.154902
Match:	1bxkA
Description:	dTDP-glucose 4,6-dehydratase (RmlB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
UDP-glucose 4-epimerase activity	2.13934644118967	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
steroid dehydrogenase activity	1.75109362865449	bayes_pls_golite062009
steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.55012034958204	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.03956654822048	bayes_pls_golite062009
oxidoreductase activity	0.881088609158401	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.82673050487418	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: