YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374673, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374673, gi|....

Description	E-value	Query Range	Subject Range
gi\|229512766, gi... - gi\|229512766\|ref\|ZP_04402234.1\| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae TMA 21], gi\|22... gi\|29726007 - gi\|29726007\|gb\|AAO88936.1\| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]	284.0	[0..1]	[176..1]
gi\|119865668, gi... - gi\|119947064\|ref\|YP_944744.1\| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychromonas ingrahamii 37], gi\|...	283.0	[0..1]	[176..1]
gi\|46451854 - gi\|46451854\|gb\|AAS98029.1\| RmlC [Shigella boydii]	276.0	[0..1]	[177..1]
gi\|237704492, gi... - gi\|237704492\|ref\|ZP_04534973.1\| RmlC [Escherichia sp. 3_2_53FAA], gi\|226900858\|gb\|EEH87117.1\| RmlC [... gi\|115513358, gi... - gi\|117624234\|ref\|YP_853147.1\| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli APEC O...	275.0	[0..1]	[177..1]
gi\|37197227, gi\|... - gi\|37678487\|ref\|NP_933096.1\| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio vulnificus YJ016],...	275.0	[0..1]	[177..1]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCIETELAE VLIFEPKVFG DERGFFMETF RQAYFTECLL SRGFEAPALV QDNYSRSQQH  60
   61 VLRGLHYQLR HPQGKLVRVC AGSIFDVAVD IRPQSATYGK WVGRILSADN HLQMWIPPGF 120
  121 AHGFYVLSEY ADVLYRCSDY YAPNDEYVLP WNSVQFAIDW PLLNETPILS ARDANAVSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.221849
Match:	1dzrA
Description:	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
dTDP-4-dehydrorhamnose 3,5-epimerase activity	2.99216880710047	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	0.79850768705664	bayes_pls_golite062009
catalytic activity	0.77242843392921	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.33927425209029	bayes_pls_golite062009
isomerase activity	0.02840080734269	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: