YRC Public Data Repository - Protein Structure Prediction

Protein:	SYP_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	570 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYP_SHEON.

Description	E-value	Query Range	Subject Range
SYP_SHESM - Proline--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=proS PE=3 SV=1	498.0	[0..1]	[570..1]
SYP_SHESR - Proline--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=proS PE=3 SV=1	498.0	[0..1]	[570..1]
SYP_SHEPC - Proline--tRNA ligase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=proS PE=3 SV=1	497.0	[0..1]	[569..1]
SYP_SHEB9 - Proline--tRNA ligase OS=Shewanella baltica (strain OS195) GN=proS PE=3 SV=1	497.0	[0..1]	[569..1]
gi\|26106541, gi\|... - gi\|26246144\|ref\|NP_752183.1\| prolyl-tRNA synthetase [Escherichia coli CFT073], gi\|26106541\|gb\|AAN787... gi\|91070839, gi\|... - gi\|91209265\|ref\|YP_539251.1\| prolyl-tRNA synthetase [Escherichia coli UTI89], gi\|91070839\|gb\|ABE0572... gi\|226902266, gi... - gi\|237704354\|ref\|ZP_04534835.1\| prolyl-tRNA synthetase [Escherichia sp. 3_2_53FAA], gi\|226902266\|gb\|...	496.0	[0..1]	[569..19]
SYP_SHESA - Proline--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=proS PE=3 SV=1	495.0	[0..1]	[570..1]
SYP_SHESW - Proline--tRNA ligase OS=Shewanella sp. (strain W3-18-1) GN=proS PE=3 SV=1	495.0	[0..1]	[569..1]
SYP_ECOK1 - Proline--tRNA ligase OS=Escherichia coli O1:K1 / APEC GN=proS PE=3 SV=1 SYP_ECOSM - Proline--tRNA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=proS PE=3 SV=1 SYP_ECO27 - Proline--tRNA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proS PE=3 SV=1 SYP_ECOL6 - Proline--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=proS PE=3 SV=... SYP_ECO45 - Proline--tRNA ligase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=proS PE=3 SV=1 SYP_ECO81 - Proline--tRNA ligase OS=Escherichia coli O81 (strain ED1a) GN=proS PE=3 SV=1 sp\|B7UJ96\|SYP_ECO27 - Prolyl-tRNA synthetase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proS PE=3 SV=1 SYP_ECOUT - Proline--tRNA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=proS PE=3 SV=2 SYP_ECOL5 - Proline--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=proS PE=3 SV=1 SYP_ECOL6 - Proline--tRNA ligase OS=Escherichia coli O6 GN=proS PE=3 SV=2 gi\|227884892, gi... - gi\|227884892\|ref\|ZP_04002697.1\| proline--tRNA ligase [Escherichia coli 83972], gi\|227838141\|gb\|EEJ48... gi\|190908349, gi... - gi\|75241739\|ref\|ZP_00725576.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli F11], gi\|191171415\|...	494.0	[0..1]	[569..1]
SYP_SHEB5 - Proline--tRNA ligase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=proS PE=3 SV=1	494.0	[0..1]	[569..1]
gi\|124529581, gi... - gi\|124529581\|ref\|ZP_01700525.1\| prolyl-tRNA synthetase [Escherichia coli B], gi\|124499737\|gb\|EAY4722... gi\|194439920, gi... - gi\|83584732\|ref\|ZP_00923396.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli 101-1], gi\|19443992... SYP_SHIF8 - Proline--tRNA ligase OS=Shigella flexneri serotype 5b (strain 8401) GN=proS PE=3 SV=2 SYP_ECOSE - Proline--tRNA ligase OS=Escherichia coli (strain SE11) GN=proS PE=3 SV=1 SYP_ECO8A - Proline--tRNA ligase OS=Escherichia coli O8 (strain IAI1) GN=proS PE=3 SV=1 gi\|251783753, gi... - gi\|251783753\|ref\|YP_002998057.1\| hypothetical protein B21_00192 [Escherichia coli BL21], gi\|24237602... gi\|188494186, gi... - gi\|188494186\|ref\|ZP_03001456.1\| prolyl-tRNA synthetase [Escherichia coli 53638], gi\|188489385\|gb\|EDU... gi\|254160314, gi... - gi\|254160314\|ref\|YP_003043422.1\| prolyl-tRNA synthetase [Escherichia coli B str. REL606], gi\|2539722... SYP_SHIFL - Proline--tRNA ligase OS=Shigella flexneri GN=proS PE=3 SV=4 gi\|254287117, gi... - gi\|254287117\|ref\|YP_003052865.1\| prolyl-tRNA synthetase [Escherichia coli BL21(DE3)], gi\|253976424\|g... SYP_ECOLC - Proline--tRNA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=proS PE=3 SV=1 gi\|193067639, gi... - gi\|75238899\|ref\|ZP_00722881.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli E110019], gi\|193067... gi\|192931051, gi... - gi\|75258812\|ref\|ZP_00730202.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli E22], gi\|193063143\|... SYP_SHIB3 - Proline--tRNA ligase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=proS PE=3 SV=1 SYP_ECOHS - Proline--tRNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=proS PE=3 SV=1 gi\|56383174, gi\|... - gi\|56479623\|ref\|NP_706140.2\| prolyl-tRNA synthetase [Shigella flexneri 2a str. 301], gi\|56383174\|gb\|... SYP_SHISS - Proline--tRNA ligase OS=Shigella sonnei (strain Ss046) GN=proS PE=3 SV=1 gi\|30039993, gi\|... - gi\|30061751\|ref\|NP_835922.1\| prolyl-tRNA synthetase [Shigella flexneri 2a str. 2457T], gi\|30039993\|g... SYP_SHIBS - Proline--tRNA ligase OS=Shigella boydii serotype 4 (strain Sb227) GN=proS PE=3 SV=1	493.0	[0..1]	[569..1]

Back

Predicted Domain #1

Region A:
Residues: [1-570]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVSKYLLST QKETPANAEV ISHQLMLRAG MIRRNASGLY SYLPSGLRVL RKVEAIVREE  60
   61 MNKAGAIEIL MPMVQPADLW VETGRWDKFG PELLRFKDRH NRDFVLGPTH EEVITDLIRK 120
  121 EVSSYKQLPL NLYQIQTKFR DEVRPRFGVM RSREFLMKDA YSFHLDMDTL NETYEAMYQA 180
  181 YSNILSRMGL AFRPVLADTG SIGGSMSHEF HVLAQSGEDL IAYSTGSDYA ANIEKAESPM 240
  241 PTETRGAATK ELRLVDTPNA KTIAELVEQF GLDITKTVKT LIVKGATEEA PLVALIVRGD 300
  301 HELNEIKADK LDLVASPLEF APEALIRDAI GAGPGSLGPV GLNMPIIIDH SVSVMSDFAA 360
  361 GANVDDKHYF GINWERDLPL AQAADIRNVV EGEPTPDGLG TYAMARGIEV GHIFQLGTNY 420
  421 SKSMNATVLD ENGKSQVLLM GCYGVGVSRI VAAAIEQNFD DRGIVWPEAI APFSVGILPM 480
  481 NMHKSHRVTD IAEQLYKDLS AAGIDVLLDD RKERPGVMFA DMELIGIPHT VVIGDRNIDA 540
  541 GVFEYKNRRT GEKQDVPFDQ IVDFLKNLQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	113.0
Match:	2j3lA
Description:	No description for 2j3lA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits