YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374596, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374596, gi|....

Description	E-value	Query Range	Subject Range
gi\|25316695 - pir\|\|A83664 tRNA/rRNA methyltransferase BH0113 [imported] - Bacillus halodurans (strain C-125) gi\|15612676, gi\|... - gi\|15612676\|ref\|NP_240979.1\| tRNA/rRNA methyltransferase [Bacillus halodurans C-125], gi\|10172725\|db...	160.0	[0..14]	[166..89]
gi\|77972419, gi\|... - gi\|77972419\|ref\|ZP_00827985.1\| COG0566: rRNA methylases [Yersinia frederiksenii ATCC 33641], gi\|2387...	158.0	[0..5]	[200..1]
gi\|77958429, gi\|... - gi\|77958429\|ref\|ZP_00822462.1\| COG0566: rRNA methylases [Yersinia bercovieri ATCC 43970], gi\|2387840...	158.0	[0..5]	[200..1]
gi\|238797645, gi... - gi\|77962009\|ref\|ZP_00825836.1\| COG0566: rRNA methylases [Yersinia mollaretii ATCC 43969], gi\|2387976...	157.0	[0..5]	[200..1]
gi\|165936350, gi... - gi\|89102581\|ref\|ZP_01175204.1\| COG0566: rRNA methylases [Yersinia pestis biovar Orientalis str. IP27... gi\|108781409, gi... - gi\|108809496\|ref\|YP_653412.1\| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Antiqua], gi\|10... gi\|229836148, gi... - gi\|229836148\|ref\|ZP_04456316.1\| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides ... gi\|22124024, gi\|... - gi\|22124024\|ref\|NP_667447.1\| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis KIM], gi\|2195676... gi\|229839886, gi... - gi\|229839886\|ref\|ZP_04460045.1\| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Ori... gi\|25331659 - pir\|\|AF0005 tRNA (guanosine-2'-O-)-methyltransferase (EC 2.1.1.34) [imported] - Yersinia pestis (str... gi\|229690278, gi... - gi\|229841968\|ref\|ZP_04462123.1\| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Ori... gi\|51594392, gi\|... - gi\|51594392\|ref\|YP_068583.1\| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis IP 3... gi\|229678621, gi... - gi\|229904503\|ref\|ZP_04519614.1\| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516],... Q66GE8\|Q66GE8_YERPS - TRNA (Guanosine-2'-O-)-methyltransferase - Yersinia pseudotuberculosis gi\|45434758, gi\|... - gi\|45439903\|ref\|NP_991442.1\| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Microtus ... gi\|15978152, gi\|... - gi\|218927258\|ref\|YP_002345133.1\| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis CO92], gi\|16... gi\|77630894, gi\|... - gi\|77630894\|ref\|ZP_00793480.1\| COG0566: rRNA methylases [Yersinia pseudotuberculosis IP 31758], gi\|1... gi\|167402131, gi... - gi\|167402131\|ref\|ZP_02307608.1\| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqu... gi\|166205088, gi... - gi\|166213686\|ref\|ZP_02239721.1\| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqu... gi\|167054333, gi... - gi\|167426644\|ref\|ZP_02318397.1\| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Mediae... gi\|166963391, gi... - gi\|167419397\|ref\|ZP_02311150.1\| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orient... gi\|167468213 - gi\|167468213\|ref\|ZP_02332917.1\| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis FV-1] gi\|150260899, gi... - gi\|150260899\|ref\|ZP_01917627.1\| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CA88-4125]... gi\|145601108, gi... - gi\|145601108\|ref\|YP_001165184.1\| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Pestoides F]... gi\|165989610, gi... - gi\|166011464\|ref\|ZP_02232362.1\| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqu... gi\|77634084, gi\|... - gi\|77634084\|ref\|ZP_00796193.1\| COG0566: rRNA methylases [Yersinia pestis Angola], gi\|162419568\|ref\|Y... gi\|165926178, gi... - gi\|165926178\|ref\|ZP_02222010.1\| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orient...	157.0	[0..5]	[200..1]
gi\|91213169, gi\|... - gi\|91213169\|ref\|YP_543155.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UTI89], gi\|9107... gi\|157078987, gi... - gi\|75188409\|ref\|ZP_00701676.1\| COG0566: rRNA methylases [Escherichia coli E24377A], gi\|157156957\|ref... gi\|115515047, gi... - gi\|117625923\|ref\|YP_859246.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli APEC O1], gi\|1... gi\|218560723, gi... - gi\|218560723\|ref\|YP_002393636.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli S88], gi\|21... gi\|218429498, gi... - gi\|218691934\|ref\|YP_002400146.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ED1a], gi\|2... gi\|26110728, gi\|... - gi\|26250298\|ref\|NP_756338.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli CFT073], gi\|261...	156.0	[0..5]	[200..1]
gi\|187771590, gi... - gi\|187771590\|gb\|EDU35434.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4... gi\|168766072, gi... - gi\|189364456\|gb\|EDU82875.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4... gi\|189374444, gi... - gi\|189374444\|gb\|EDU92860.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC8... gi\|168779807, gi... - gi\|189002529\|gb\|EDU71515.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4... gi\|170018119, gi... - gi\|170018119\|ref\|YP_001723073.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739],... gi\|189378798, gi... - gi\|189378798\|gb\|EDU97214.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC5... gi\|13364001, gi\|... - gi\|15833780\|ref\|NP_312553.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. Sa... gi\|195936212 - gi\|195936212\|ref\|ZP_03081594.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str.... gi\|110807671, gi... - gi\|110807671\|ref\|YP_691191.1\| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 5 str. 8401],... gi\|169890993, gi... - gi\|170083158\|ref\|YP_001732478.1\| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-1... gi\|238863706, gi... - gi\|238902742\|ref\|YP_002928538.1\| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952],... gi\|242379175, gi... - gi\|251786902\|ref\|YP_003001206.1\| hypothetical protein B21_03460 [Escherichia coli BL21], gi\|24237917... gi\|253322551, gi... - gi\|254290329\|ref\|YP_003056077.1\| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BL21(DE3... gi\|226838817, gi... - gi\|254038852\|ref\|ZP_04872904.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43], gi\|2... gi\|254163579, gi... - gi\|254163579\|ref\|YP_003046687.1\| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli B str. R... gi\|168748698, gi... - gi\|188017001\|gb\|EDU55123.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4... gi\|254795606, gi... - gi\|254795606\|ref\|YP_003080443.1\| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 ... gi\|189369492, gi... - gi\|189369492\|gb\|EDU87908.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4... gi\|189359254, gi... - gi\|189359254\|gb\|EDU77673.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4... gi\|124528992, gi... - gi\|124528992\|ref\|ZP_01700138.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B], gi\|12450... TRMH_ECOLI - tRNA guanosine-2'-O-methyltransferase (EC 2.1.1.34) (tRNA [Gm18] methyltransferase) - Escherichia co... gi\|188491145, gi... - gi\|75514286\|ref\|ZP_00736594.1\| COG0566: rRNA methylases [Escherichia coli 53638], gi\|188495946\|ref\|Z... gi\|208812795, gi... - gi\|208812795\|ref\|ZP_03254124.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str.... gi\|73857591, gi\|... - gi\|74314114\|ref\|YP_312533.1\| tRNA guanosine-2'-O-methyltransferase [Shigella sonnei Ss046], gi\|73857... gi\|208806132, gi... - gi\|208806132\|ref\|ZP_03248469.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str.... gi\|24114921, gi\|... - gi\|24114921\|ref\|NP_709431.1\| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str. 301], ... gi\|190902169, gi... - gi\|75229042\|ref\|ZP_00715626.1\| COG0566: rRNA methylases [Escherichia coli B7A], gi\|191167826\|ref\|ZP_... gi\|209398863, gi... - gi\|209398863\|ref\|YP_002273131.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str... TRMH_SHIFL - tRNA (guanosine(18)-2'-O)-methyltransferase OS=Shigella flexneri GN=trmH PE=3 SV=1 gi\|193063862, gi... - gi\|75258192\|ref\|ZP_00729640.1\| COG0566: rRNA methylases [Escherichia coli E22], gi\|193063862\|ref\|ZP_... gi\|208739228, gi... - gi\|208819105\|ref\|ZP_03259425.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str.... TRMH_ECO57 - tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli O157:H7 GN=trmH PE=3 SV=1 gi\|217324129, gi... - gi\|217324129\|ref\|ZP_03440213.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str.... gi\|30043334, gi\|... - gi\|30065073\|ref\|NP_839244.1\| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str. 2457T]... gi\|209914383, gi... - gi\|209921124\|ref\|YP_002295208.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SE11], gi\|2... gi\|15804192, gi\|... - gi\|15804192\|ref\|NP_290231.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 EDL933]... gi\|82546080, gi\|... - gi\|82546080\|ref\|YP_410027.1\| tRNA guanosine-2'-O-methyltransferase [Shigella boydii Sb227], gi\|81247... gi\|218362982, gi... - gi\|218556214\|ref\|YP_002389127.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI1], gi\|2... EG10967 - tRNA mG18-2'-O-methyltransferase, SAM-dependent / tRNA mG18 2'-O-methyltransferase, SAM-dependent gi\|85676392, gi\|... - gi\|89110361\|ref\|AP_004141.1\| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-12 su... gi\|218551178, gi... - gi\|218551178\|ref\|YP_002384969.1\| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ATCC ... gi\|75197554, gi\|... - gi\|75197554\|ref\|ZP_00707624.1\| COG0566: rRNA methylases [Escherichia coli HS], gi\|157163132\|ref\|YP_0... gi\|75208677, gi\|... - gi\|75208677\|ref\|ZP_00708974.1\| COG0566: rRNA methylases [Escherichia coli B171], gi\|194430057\|ref\|ZP... gi\|194425496, gi... - gi\|83588502\|ref\|ZP_00927126.1\| COG0566: rRNA methylases [Escherichia coli 101-1], gi\|194435953\|ref\|Z... EG10967 - tRNA mG18-2'-O-methyltransferase, SAM-dependent / tRNA mG18 2'-O-methyltransferase, SAM-dependent	156.0	[0..5]	[200..1]
gi\|224585541, gi... - gi\|224585541\|ref\|YP_002639340.1\| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.... gi\|206710783, gi... - gi\|207858980\|ref\|YP_002245631.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. e... gi\|200387615, gi... - gi\|200387615\|ref\|ZP_03214227.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. en... gi\|194735347, gi... - gi\|194735347\|ref\|YP_002116686.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. e... gi\|238910216 - gi\|238910216\|ref\|ZP_04654053.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. en... gi\|194469893, gi... - gi\|194469893\|ref\|ZP_03075877.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. en... gi\|194448230, gi... - gi\|194448230\|ref\|YP_002047774.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. e... gi\|62129870, gi\|... - gi\|62182237\|ref\|YP_218654.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enter... gi\|194444680, gi... - gi\|194444680\|ref\|YP_002042992.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. e... gi\|168818425, gi... - gi\|205344462\|gb\|EDZ31226.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enteri... gi\|168260501, gi... - gi\|205350250\|gb\|EDZ36881.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enteri... gi\|168241923, gi... - gi\|205339031\|gb\|EDZ25795.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enteri... gi\|168235358, gi... - gi\|197291598\|gb\|EDY30950.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enteri... gi\|205332504, gi... - gi\|205332504\|gb\|EDZ19268.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enteri... gi\|205325898, gi... - gi\|205325898\|gb\|EDZ13737.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enteri...	156.0	[0..16]	[200..14]
gi\|213425217 - gi\|213425217\|ref\|ZP_03357967.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. en... gi\|213417916 - gi\|213417916\|ref\|ZP_03351009.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. en... gi\|213052646 - gi\|213052646\|ref\|ZP_03345524.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. en... gi\|29139692, gi\|... - gi\|29144056\|ref\|NP_807398.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enter... gi\|16762567 - gi\|16762567\|ref\|NP_458184.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enter... gi\|214001536 - gi\|214001536\|ref\|ZP_03412271.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. en... gi\|213647939 - gi\|213647939\|ref\|ZP_03377992.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. en... gi\|25331661, gi\|... - gi\|25331661\|pir\|\|AF0969 tRNA (guanosine-2'-O-)-methyltransferase (EC 2.1.1.34) - Salmonella enterica... gi\|213580806 - gi\|213580806\|ref\|ZP_03362632.1\| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. en...	156.0	[0..16]	[200..14]
gi\|77954715, gi\|... - gi\|77954715\|ref\|ZP_00819103.1\| RNA methyltransferase TrmH, group 3 [Marinobacter aquaeolei VT8], gi\|...	155.0	[0..8]	[167..81]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSSSTTTLV DAVASPQAQQ AVYIGLVNPK TPTNVGGIMR ASGCYGVDAV FYTGKRYEYA  60
   61 ARGPQQYNAD TQSAAERIPL TGVTSLLDAI PAGTQLVCVD LVLGATPLPE FVHPERAFYV 120
  121 FGPEDGTIGQ EIIDRADAVV YVPTVGCMNL AASVNVLLYD RLAKTYRKQA TNEAEFDGDA 180
  181 LIRTSRDNNN RTRVKTTKRE SSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	1zjrA
Description:	Crystal Structure of A. aeolicus TrmH/SpoU tRNA modifying enzyme
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits