YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349096, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349096, gi|....

Description	E-value	Query Range	Subject Range
gi\|120559399, gi... - gi\|82743852\|ref\|ZP_00906471.1\| Phage replication protein O, N-terminal [Shewanella sp. W3-18-1], gi\|...	429.0	[0..1]	[338..19]
gi\|193069610, gi... - gi\|193069610\|ref\|ZP_03050563.1\| replication protein O [Escherichia coli E110019], gi\|192957157\|gb\|ED... gi\|25301719 - pir\|\|E85639 hypothetical protein Z1450 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|20065919, gi\|... - gi\|20065919\|ref\|NP_613002.1\| O protein [Stx2 converting phage I], gi\|19911711\|dbj\|BAB87971.1\| O prot... gi\|226344701 - gi\|226344701\|gb\|ACO48873.1\| replication protein O [Enterobacteria phage 32] gi\|4585405, gi\|9... - gi\|9632494\|ref\|NP_049488.1\| replication protein O [Enterobacteria phage 933W], gi\|4585405\|gb\|AAD2543... gi\|15800950, gi\|... - gi\|15800950\|ref\|NP_286966.1\| putative replication protein O of bacteriophage BP-933W [Escherichia co... gi\|226344711 - gi\|226344711\|gb\|ACO48881.1\| replication protein O [Enterobacteria phage 22]	399.0	[0..17]	[302..20]
gi\|208819449, gi... - gi\|208819449\|ref\|ZP_03259769.1\| replication protein O [Escherichia coli O157:H7 str. EC4042], gi\|208... gi\|208734876, gi... - gi\|208813599\|ref\|ZP_03254928.1\| replication protein O [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|11875126\|dbj\|... - O protein [Escherichia coli O157:H7] gi\|208729203, gi... - gi\|208809402\|ref\|ZP_03251739.1\| replication protein O [Escherichia coli O157:H7 str. EC4206], gi\|208... gi\|195938670 - gi\|195938670\|ref\|ZP_03084052.1\| phage replication protein O [Escherichia coli O157:H7 str. EC4024] gi\|217319225, gi... - gi\|217326858\|ref\|ZP_03442941.1\| replication protein O [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|209395860, gi... - gi\|209395860\|ref\|YP_002271812.1\| replication protein O [Escherichia coli O157:H7 str. EC4115], gi\|20... gi\|15832241, gi\|... - gi\|15832241\|ref\|NP_311014.1\| phage replication protein O [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|168758906, gi... - gi\|189354364\|gb\|EDU72783.1\| replication protein O [Escherichia coli O157:H7 str. EC4401], gi\|1687589... gi\|168748266, gi... - gi\|188017340\|gb\|EDU55462.1\| replication protein O [Escherichia coli O157:H7 str. EC4113], gi\|1687482... gi\|189001893, gi... - gi\|189001893\|gb\|EDU70879.1\| replication protein O [Escherichia coli O157:H7 str. EC4076], gi\|1687802... gi\|226344706 - gi\|226344706\|gb\|ACO48877.1\| replication protein O [Enterobacteria phage 27] gi\|168772856, gi... - gi\|187771303\|gb\|EDU35147.1\| replication protein O [Escherichia coli O157:H7 str. EC4196], gi\|1687728... gi\|254794284, gi... - gi\|254794284\|ref\|YP_003079121.1\| replication protein O [Escherichia coli O157:H7 str. TW14359], gi\|2... gi\|168771821, gi... - gi\|189359516\|gb\|EDU77935.1\| replication protein O [Escherichia coli O157:H7 str. EC4486], gi\|1687718... gi\|168764185, gi... - gi\|189365763\|gb\|EDU84179.1\| replication protein O [Escherichia coli O157:H7 str. EC4501], gi\|1687641... gi\|15832241, gi\|... - gi\|15832241\|ref\|NP_311014.1\| phage replication protein O [Escherichia coli O157:H7], gi\|13362456\|dbj... gi\|25301716 - pir\|\|C91002 phage replication protein O [imported] - Escherichia coli (strain O157:H7, substrain RI... gi\|30910938, gi\|... - gi\|49523610\|emb\|CAD88828.1\| putative replication protein O [Phage BP-4795], gi\|31044249\|ref\|NP_85196...	399.0	[0..17]	[302..20]
gi\|2668760 - gi\|2668760\|gb\|AAD04647.1\| O protein [Bacteriophage H-19B]	397.0	[0..17]	[302..20]
gi\|15802657, gi\|... - gi\|15802657\|ref\|NP_288684.1\| putative DNA replication protein O of prophage CP-933V [Escherichia col... gi\|25301718 - pir\|\|C85847 hypothetical protein Z3356 [imported] - Escherichia coli (strain O157:H7, substrain EDL...	394.0	[0..17]	[302..20]
gi\|223238 - gi\|223238\|prf\|\|0611193A protein P,replicatory	391.0	[0..17]	[302..183]
gi\|193067680, gi... - gi\|75238966\|ref\|ZP_00722948.1\| hypothetical protein EcolE1_01000732 [Escherichia coli E110019], gi\|1...	386.0	[0..5]	[302..41]
gi\|110641331, gi... - gi\|110641331\|ref\|YP_669061.1\| replication protein O [Escherichia coli 536], gi\|110342923\|gb\|ABG69160... gi\|191173124, gi... - gi\|75239642\|ref\|ZP_00723609.1\| hypothetical protein EcolF_01002998 [Escherichia coli F11], gi\|191173...	385.0	[0..5]	[302..41]
gi\|75189795 - gi\|75189795\|ref\|ZP_00703062.1\| hypothetical protein EcolE_01003087 [Escherichia coli E24377A]	385.0	[0..5]	[302..41]
gi\|218553315, gi... - gi\|218553315\|ref\|YP_002386228.1\| Replication protein O frm phage origin [Escherichia coli IAI1], gi\|... gi\|191166543, gi... - gi\|75230279\|ref\|ZP_00716776.1\| hypothetical protein EcolB7_01001539 [Escherichia coli B7A], gi\|19116...	384.0	[0..5]	[302..41]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLRPVAEHK QQTRGGVVKA DLEDGYLRLS NTLVDALCRT KLSDRESRVV FAVIRRTYGY  60
   61 GKATDWVCLE QLADMTGITT SNICHAIKSL TARDIIIKDG RKVGVNQIVS AWQDKKSHSI 120
  121 NGKKSTVKTD NIIVNSDNAI VETDSVDCQN REIQKKDNIT KDTIQK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [167-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISSSHIADAM ADMQVKPDAA VQTPNGKLWG TQDDLKCAEY IFNKVLIVNP TAKQPNWPDW  60
   61 ANQVRLMRMQ DNRSHHDICK LFKFANSDSF WASNVLCPKT LRKQWDKLNA KLLARSSHEA 120
  121 NTPTATANTA RYEHSTARVF RELREMAEQL QHSADHLGGG NTIDADYEPV QP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits