YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374450, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	407 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374450, gi|....

Description	E-value	Query Range	Subject Range
gi\|37200223, gi\|... - gi\|37675684\|ref\|NP_936080.1\| sodium/glutamate symporter [Vibrio vulnificus YJ016], gi\|37200223\|dbj\|B... gi\|27367577, gi\|... - gi\|27367577\|ref\|NP_763104.1\| Na+/glutamate symporter [Vibrio vulnificus CMCP6], gi\|27359149\|gb\|AAO08...	468.0	[0..1]	[406..1]
gi\|149748388, gi... - gi\|153838256\|ref\|ZP_01990923.1\| sodium/glutamate symporter [Vibrio parahaemolyticus AQ3810], gi\|1497... gi\|28808173, gi\|... - gi\|28899890\|ref\|NP_799545.1\| sodium/glutamate symporter [Vibrio parahaemolyticus RIMD 2210633], gi\|2... gi\|28808173 - gi\|28808173\|dbj\|BAC61378.1\| sodium/glutamate symporter [Vibrio parahaemolyticus RIMD 2210633]	468.0	[0..1]	[406..1]
gi\|151940086, gi... - gi\|75855560\|ref\|ZP_00763207.1\| COG0786: Na+/glutamate symporter [Vibrio sp. Ex25], gi\|254227474\|ref\|...	464.0	[0..1]	[406..1]
gi\|91222967, gi\|... - gi\|91222967\|ref\|ZP_01258233.1\| sodium/glutamate symporter [Vibrio alginolyticus 12G01], gi\|91191780\|...	459.0	[0..1]	[406..1]
gi\|46913705, gi\|... - gi\|54309273\|ref\|YP_130293.1\| putative sodium/glutamate symporter [Photobacterium profundum SS9], gi\|...	452.0	[0..1]	[406..1]
gi\|90410464, gi\|... - gi\|90410464\|ref\|ZP_01218480.1\| Putative sodium/glutamate symporter [Photobacterium profundum 3TCK], ...	450.0	[0..1]	[406..1]
gi\|37200225, gi\|... - gi\|37675686\|ref\|NP_936082.1\| sodium/glutamate symporter [Vibrio vulnificus YJ016], gi\|37200225\|dbj\|B...	445.0	[0..1]	[406..1]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTTYTIGEL ESFLIAIFVL FIGHSINRHV RVFKQYNIPE PIVGGLVVAA VIAFLHFQDI  60
   61 TLAFSL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMQNTLMLMF FSTIGLSANY KLLLSGGKKV FIFLGVASVY IIIQNAVGVS LASLLGLDPI  60
   61 LGLIAGSITL SGGHGTGVAW SQTFAENYGI NTLEFAMAAA TFGLVMGGII GGPVAQRLIS 120
  121 KHNLVSSYGV GRKHHATHPQ LVTYDQLEED QVTAKTIIET LFVLLFCVAG AKWFTVLVSE 180
  181 YGLNWLKMPD FVYALFLGVV IANITEVTRG YKPHTESIDV IGTVAL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [293-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLFLSMALMN LKLWEILDLA IPLLIILVVQ TAVLAVFAYF VTFKVMGSNY DAAVITGGHC  60
   61 GFGMGATPTA VMNMGALVSR TGPSPQAFMV VPIVGAFFID IVNLIVLQGY LSFIM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits