YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374440, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374440, gi|....

Description	E-value	Query Range	Subject Range
gi\|90412861, gi\|... - gi\|90412861\|ref\|ZP_01220861.1\| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium p...	205.0	[0..1]	[246..1]
gi\|46914345, gi\|... - gi\|54309906\|ref\|YP_130926.1\| pyruvate formate lyase-activating enzyme 1 [Photobacterium profundum SS...	203.0	[0..1]	[246..1]
gi\|90579339, gi\|... - gi\|90579339\|ref\|ZP_01235149.1\| putative pyruvate formate-lyase 1 activating enzyme [Vibrio angustum ...	202.0	[0..1]	[246..1]
gi\|78509139, gi\|... - gi\|78691464\|ref\|ZP_00856079.1\| Calcium-binding EF-hand [Shewanella sp. MR-7], gi\|78509139\|gb\|EAP2254...	199.0	[0..1]	[246..1]
gi\|82498163, gi\|... - gi\|82498163\|ref\|ZP_00883675.1\| Calcium-binding EF-hand [Shewanella sp. MR-4], gi\|82403830\|gb\|EAP4453...	199.0	[0..1]	[246..1]
gi\|117920002, gi... - gi\|78685959\|ref\|ZP_00850732.1\| Calcium-binding EF-hand [Shewanella sp. ANA-3], gi\|78506274\|gb\|EAP197...	199.0	[0..1]	[246..1]
gi\|205358099, gi... - gi\|205358099\|ref\|ZP_02575805.2\| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subs... gi\|62127127, gi\|... - gi\|62179494\|ref\|YP_215911.1\| pyruvate formate lyase activating enzyme 1 [Salmonella enterica subsp. ...	198.0	[0..2]	[246..48]
tr\|D7H9T4\|D7H9T4... - Pyruvate formate-lyase 1 activating enzyme OS=Vibrio cholerae RC385 GN=VCRC385_01301 PE=4 SV=1 gi\|150420196, gi... - gi\|75824114\|ref\|ZP_00753580.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Vibrio cholerae RC...	196.0	[0..1]	[246..1]
gi\|117623083, gi... - gi\|117623083\|ref\|YP_851996.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli APEC O1],...	196.0	[0..2]	[246..21]
gi\|124498235, gi... - gi\|124531973\|ref\|ZP_01702032.1\| pyruvate formate-lyase activating enzyme [Escherichia coli B], gi\|12... gi\|238900160, gi... - gi\|238900160\|ref\|YP_002925956.1\| pyruvate formate lyase activating enzyme 1 [Escherichia coli BW2952... gi\|110804910, gi... - gi\|110804910\|ref\|YP_688430.1\| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 5 str. 8... gi\|218557807, gi... - gi\|218557807\|ref\|YP_002390720.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli S88], ... gi\|242376717, gi... - gi\|251784444\|ref\|YP_002998748.1\| hypothetical protein B21_00913 [Escherichia coli BL21], gi\|24237671... gi\|218426306, gi... - gi\|218688742\|ref\|YP_002396954.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ED1a],... gi\|253977131, gi... - gi\|254287824\|ref\|YP_003053572.1\| pyruvate formate lyase activating enzyme 1 [Escherichia coli BL21(D... gi\|218694375, gi... - gi\|218694375\|ref\|YP_002402042.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 55989]... gi\|254161016, gi... - gi\|254161016\|ref\|YP_003044124.1\| pyruvate formate lyase activating enzyme 1 [Escherichia coli B str.... gi\|218700580, gi... - gi\|218700580\|ref\|YP_002408209.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI39]... gi\|254591501, gi... - gi\|254792101\|ref\|YP_003076938.1\| pyruvate formate lyase activating enzyme 1 [Escherichia coli O157:H... gi\|218431426, gi... - gi\|218704329\|ref\|YP_002411848.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UMN026... gi\|89107752, gi\|... - gi\|89107752\|ref\|AP_001532.1\| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K-12 ... gi\|15830239, gi\|... - gi\|15830239\|ref\|NP_309012.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 st... gi\|110342691, gi... - gi\|110641099\|ref\|YP_668829.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 536], gi\|... gi\|82544640, gi\|... - gi\|82544640\|ref\|YP_408587.1\| pyruvate formate lyase-activating enzyme 1 [Shigella boydii Sb227], gi\|... PFLA_ECOL6 - Pyruvate formate-lyase 1-activating enzyme OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / ... gi\|56479766, gi\|... - gi\|56479766\|ref\|NP_706820.2\| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a str. 3... gi\|162138459 - gi\|162138459\|ref\|YP_539989.2\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UTI89] gi\|168752115, gi... - gi\|188013962\|gb\|EDU52084.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str... gi\|168756994, gi... - gi\|189355900\|gb\|EDU74319.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str... gi\|168762963, gi... - gi\|189366831\|gb\|EDU85247.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str... gi\|189361165, gi... - gi\|189361165\|gb\|EDU79584.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str... gi\|190907575, gi... - gi\|75240976\|ref\|ZP_00724865.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Escherichia coli F... gi\|193064616, gi... - gi\|75257383\|ref\|ZP_00728899.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Escherichia coli E... gi\|194413590, gi... - gi\|75210409\|ref\|ZP_00710565.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Escherichia coli B... gi\|75234415, gi\|... - gi\|75234415\|ref\|ZP_00718776.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Escherichia coli E... PFLA_ECOL6 - Pyruvate formate-lyase 1-activating enzyme OS=Escherichia coli O6 GN=pflA PE=3 SV=2 gi\|81241726, gi\|... - gi\|82777578\|ref\|YP_403927.1\| pyruvate formate lyase-activating enzyme 1 [Shigella dysenteriae Sd197]... gi\|188492165, gi... - gi\|75512058\|ref\|ZP_00734643.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Escherichia coli 5... gi\|73854935, gi\|... - gi\|74311458\|ref\|YP_309877.1\| pyruvate formate lyase-activating enzyme 1 [Shigella sonnei Ss046], gi\|... gi\|208815370, gi... - gi\|208815370\|ref\|ZP_03256549.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7... gi\|208822382, gi... - gi\|208822382\|ref\|ZP_03262701.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7... gi\|209162241, gi... - gi\|209400841\|ref\|YP_002269574.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H... gi\|209918152, gi... - gi\|209918152\|ref\|YP_002292236.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli SE11],... gi\|75178295 - gi\|75178295\|ref\|ZP_00698349.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Shigella boydii BS... gi\|215264099, gi... - gi\|215486027\|ref\|YP_002328458.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O127:H... gi\|157160424, gi... - gi\|75195090\|ref\|ZP_00705160.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Escherichia coli H... gi\|217321082, gi... - gi\|217324861\|ref\|ZP_03440945.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7... gi\|83569141, gi\|... - gi\|83569141\|ref\|ZP_00920600.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Shigella dysenteri... gi\|218548419, gi... - gi\|218548419\|ref\|YP_002382210.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia fergusonii ... gi\|83585845, gi\|... - gi\|83585845\|ref\|ZP_00924485.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Escherichia coli 1... gi\|218553488, gi... - gi\|218553488\|ref\|YP_002386401.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI1],... gi\|187768338, gi... - gi\|187768338\|gb\|EDU32182.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str... gi\|188998898, gi... - gi\|188998898\|gb\|EDU67884.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str... gi\|189372637, gi... - gi\|189372637\|gb\|EDU91053.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str... gi\|168801415, gi... - gi\|189376430\|gb\|EDU94846.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str... gi\|169755624, gi... - gi\|170020696\|ref\|YP_001725650.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ATCC 8... gi\|170080560, gi... - gi\|170080560\|ref\|YP_001729880.1\| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K... gi\|195939563 - gi\|195939563\|ref\|ZP_03084945.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7... gi\|208805965, gi... - gi\|208805965\|ref\|ZP_03248302.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7... EG10028 - pyruvate formate-lyase 1-activating enzyme; [formate-C-acetyltransferase 1]-activating enzyme; PFL a... gi\|12514065, gi\|... - gi\|15800763\|ref\|NP_286777.1\| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 ED... EG10028 - pyruvate formate-lyase 1-activating enzyme; [formate-C-acetyltransferase 1]-activating enzyme; PFL a... PFLA_SHIFL - Pyruvate formate-lyase 1-activating enzyme OS=Shigella flexneri GN=pflA PE=3 SV=2 PFLA_ECOLI - Pyruvate formate-lyase 1-activating enzyme (EC 1.97.1.4) (PFL-activating enzyme) (Formate-C-acetyltr... gi\|30040683, gi\|... - gi\|30062437\|ref\|NP_836608.1\| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a str. 2... PFLA_ECO57 - Pyruvate formate-lyase 1-activating enzyme OS=Escherichia coli O157:H7 GN=pflA PE=3 SV=2	196.0	[0..1]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTGRIHSV ESFGTVDGPG IRFIAFMQGC LMRCQYCHNR DTWDLDGGKE VQVDELMSQI  60
   61 ISYRPFLDAS NGGVTASGGE AILQAEFVAE LFKACKKEGI HTCLDTNGFV RKYTPVIDEL 120
  121 LDHTDLVLLD IKQMNDDKHI ELTKVSNHRT LQFAEYLAKR NQPTWIRYVV VGGFTDDEAS 180
  181 ALQLAEFIKP MKNIEKVELL PYHELGKHKW EAMGESYQLD GVAPPSRETM EKIKAVFSSQ 240
  241 GINAVY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	2fb2A
Description:	No description for 2fb2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits