YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374384, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374384, gi|....

Description	E-value	Query Range	Subject Range
DPO3_CALS4 - DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242... DPO3_THETN - DNA polymerase III polC-type OS=Thermoanaerobacter tengcongensis GN=polC PE=3 SV=1	165.0	[0..2]	[181..392]
gi\|152976184, gi... - gi\|89203212\|ref\|ZP_01181903.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	164.0	[0..2]	[180..422]
gi\|125973511, gi... - gi\|67917180\|ref\|ZP_00510847.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	164.0	[0..2]	[179..433]
gi\|62423418 - gi\|62423418\|ref\|ZP_00378582.1\| COG0322: Nuclease subunit of the excinuclease complex [Brevibacterium...	163.0	[0..1]	[181..34]
gi\|42738836, gi\|... - gi\|42782909\|ref\|NP_980156.1\| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987], gi\|4273...	160.0	[0..2]	[180..422]
DPO3_CLOTE - DNA polymerase III polC-type OS=Clostridium tetani GN=polC PE=3 SV=1 DPO3_CLOTE - DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) GN=polC PE=3 SV=1	160.0	[0..2]	[180..417]
gi\|49478392, gi\|... - gi\|49478392\|ref\|YP_037879.1\| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian str. ...	160.0	[0..2]	[180..422]
gi\|228660107, gi... - gi\|229123331\|ref\|ZP_04252535.1\| DNA polymerase III polC-type [Bacillus cereus 95/8201], gi\|228660107... gi\|21401801, gi\|... - gi\|65321145\|ref\|ZP_00394104.1\| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Baci... gi\|228947537, gi... - gi\|228947537\|ref\|ZP_04109827.1\| DNA polymerase III polC-type [Bacillus thuringiensis serovar monterr... gi\|227813274, gi... - gi\|227813274\|ref\|YP_002813283.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus ant... gi\|165872624, gi... - gi\|165872624\|ref\|ZP_02217255.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anth... gi\|170687849, gi... - gi\|170687849\|ref\|ZP_02879063.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anth... gi\|170128318, gi... - gi\|170706900\|ref\|ZP_02897358.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anth... gi\|49180595, gi\|... - gi\|49186668\|ref\|YP_029920.1\| DNA polymerase III PolC [Bacillus anthracis str. Sterne], gi\|49180595\|g... gi\|52141670, gi\|... - gi\|52141670\|ref\|YP_085159.1\| DNA polymerase III PolC [Bacillus cereus E33L], gi\|51975139\|gb\|AAU16689... gi\|30258465, gi\|... - gi\|30263821\|ref\|NP_846198.1\| DNA polymerase III PolC [Bacillus anthracis str. Ames], gi\|30258465\|gb\|... gi\|47504393, gi\|... - gi\|47529245\|ref\|YP_020594.1\| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|190568456, gi... - gi\|190568456\|ref\|ZP_03021363.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anth... gi\|196042171, gi... - gi\|196042171\|ref\|ZP_03109454.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cere... gi\|218904946, gi... - gi\|218904946\|ref\|YP_002452780.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cer... gi\|254759330 - gi\|254759330\|ref\|ZP_05211355.1\| DNA polymerase III PolC [Bacillus anthracis str. Australia 94] gi\|254756009 - gi\|254756009\|ref\|ZP_05208040.1\| DNA polymerase III PolC [Bacillus anthracis str. Vollum] gi\|254721996 - gi\|254721996\|ref\|ZP_05183785.1\| DNA polymerase III PolC [Bacillus anthracis str. A1055] gi\|254683475 - gi\|254683475\|ref\|ZP_05147335.1\| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066] gi\|229601637, gi... - gi\|229601637\|ref\|YP_002868056.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus ant...	160.0	[0..2]	[180..422]
DPO3_BACCR - DNA polymerase III PolC-type OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 ... gi\|229146389, gi... - gi\|229146389\|ref\|ZP_04274760.1\| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24], gi\|2286370...	160.0	[0..2]	[180..424]
gi\|75760862, gi\|... - gi\|75760862\|ref\|ZP_00740876.1\| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar isra...	160.0	[0..2]	[180..424]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEMTGLDP FKDQILSIGL VPIENGAIPL SHAQQKLVQI RGSVGQSAII HGILDNHLTQ  60
   61 AVSIEEAMAW FMEQTRGRVL VAHHSPLDCR FLQQDILTIY HQAVLLPAID TLVLEKQRLL 120
  121 REHSVLKEGS LRLGACRERY GLPIYGAHSA LTDALACAEL LLAQVAAMGG GADISVGDLL 180
  181 T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	2p1jA
Description:	No description for 2p1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits