YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374373, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	399 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374373, gi|....

Description	E-value	Query Range	Subject Range
gi\|78509921, gi\|... - gi\|78690694\|ref\|ZP_00855335.1\| Exonuclease SbcD [Shewanella sp. MR-7], gi\|78509921\|gb\|EAP23302.1\| Ex...	250.0	[0..1]	[391..1]
gi\|82497503, gi\|... - gi\|82497503\|ref\|ZP_00883042.1\| Exonuclease SbcD [Shewanella sp. MR-4], gi\|82404532\|gb\|EAP45219.1\| Ex...	249.0	[0..1]	[391..1]
gi\|78686795, gi\|... - gi\|78686795\|ref\|ZP_00851557.1\| Exonuclease SbcD [Shewanella sp. ANA-3], gi\|78505428\|gb\|EAP18959.1\| E...	247.0	[0..1]	[398..1]
gi\|116694150, gi... - gi\|116694150\|ref\|YP_728361.1\| DNA repair exonuclease, SbcD [Ralstonia eutropha H16], gi\|113528649\|em...	244.0	[0..1]	[385..14]
gi\|113906222, gi... - gi\|160874793\|ref\|YP_001554109.1\| nuclease SbcCD, D subunit [Shewanella baltica OS195], gi\|160860315\|... gi\|146864585, gi... - gi\|217973866\|ref\|YP_002358617.1\| nuclease SbcCD, D subunit [Shewanella baltica OS223], gi\|217499001\|...	241.0	[0..1]	[386..1]
gi\|125997091, gi... - gi\|68544094\|ref\|ZP_00583767.1\| Exonuclease SbcD [Shewanella baltica OS155], gi\|68518187\|gb\|EAN41775....	240.0	[0..1]	[386..1]
gi\|82741110, gi\|... - gi\|82741110\|ref\|ZP_00903838.1\| Exonuclease SbcD [Shewanella sp. W3-18-1], gi\|82721482\|gb\|EAP56320.1\|...	240.0	[0..1]	[386..1]
gi\|77816796, gi\|... - gi\|77816796\|ref\|ZP_00815947.1\| Exonuclease SbcD [Shewanella putrefaciens CN-32], gi\|77808249\|gb\|EAO9...	239.0	[0..1]	[386..1]
gi\|53762150, gi\|... - gi\|73539404\|ref\|YP_299771.1\| exodeoxyribonuclease I subunit D [Ralstonia eutropha JMP134], gi\|721227...	238.0	[0..1]	[389..1]
gi\|93356447, gi\|... - gi\|94312595\|ref\|YP_585804.1\| exodeoxyribonuclease I subunit D [Ralstonia metallidurans CH34], gi\|933...	236.0	[0..1]	[385..1]

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Predicted Domain #1

Region A:
Residues: [1-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFIHTSDWH IGRQLHNQSL LDDQAYVLDQ IVALAQQHSV DAVIIAGDIY DRSIPPGSAV  60
   61 ALLNDVLNRL VNQLGIQVLM IAGNHDGHER LGFAAKQMAA SGLHIIGPLQ AELVPIRLTS 120
  121 PSGDAYFYPL PYAEPTTVRQ VFETDAKGLS VSSHEEAMAL LLEQVRSHDS QGLPKVVVSH 180
  181 CFLDGGSESE SERPLSIGGA DKITPRLFSE FDYVALGHLH GPQYKGCEQV RYSGSILKYS 240
  241 FSEQHQHKSV TLVDIAAQFP AQIQLLPLTA LRDLRMIEGE LANLLEEGRT DAKREDYLMV 300
  301 RLLDKHAILD AMGKLRSVYP NVLHLERTGL MAGDQAVVLN RDHIKKGEMA MFRDFFAQVS 360
  361 GDELTPAQQA VMEDILTQLH RDGLERSETH RDVKEEQAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1ii7A
Description:	Mre11
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on ester bonds	1.8004279996035	bayes_pls_golite062009
catalytic activity	1.76896578956606	bayes_pls_golite062009
phosphoprotein phosphatase activity	0.7866517939604	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.688917775744163	bayes_pls_golite062009
protein serine/threonine phosphatase activity	0.54706138092005	bayes_pls_golite062009
phosphatase activity	0.539555179646341	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: