YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374292, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374292, gi|....

Description	E-value	Query Range	Subject Range
gi\|82403292, gi\|... - gi\|82498711\|ref\|ZP_00884173.1\| MotA/TolQ/ExbB proton channel family protein [Shewanella sp. MR-4], g...	209.0	[0..1]	[227..1]
gi\|113889377, gi... - gi\|114047935\|ref\|YP_738485.1\| MotA/TolQ/ExbB proton channel [Shewanella sp. MR-7], gi\|113889377\|gb\|A... gi\|117920975, gi... - gi\|78688318\|ref\|ZP_00853023.1\| MotA/TolQ/ExbB proton channel family protein [Shewanella sp. ANA-3], ...	208.0	[0..1]	[227..1]
gi\|120599222, gi... - gi\|82744255\|ref\|ZP_00906835.1\| MotA/TolQ/ExbB proton channel family protein [Shewanella sp. W3-18-1]... gi\|77808266, gi\|... - gi\|77816780\|ref\|ZP_00815934.1\| MotA/TolQ/ExbB proton channel [Shewanella putrefaciens CN-32], gi\|778... gi\|124507513, gi... - gi\|124550360\|ref\|ZP_01708012.1\| MotA/TolQ/ExbB proton channel [Shewanella putrefaciens 200], gi\|1245...	208.0	[0..1]	[227..1]
gi\|112774536 - gi\|112774536\|gb\|ABI20705.1\| putative MotA/TolQ/ExbB proton channel [Delftia sp. AN3]	208.0	[0..3]	[220..33]
gi\|71849286, gi\|... - gi\|71909665\|ref\|YP_287252.1\| MotA/TolQ/ExbB proton channel [Dechloromonas aromatica RCB], gi\|7184928...	207.0	[0..1]	[220..3]
gi\|71556307, gi\|... - gi\|71735754\|ref\|YP_275910.1\| tolQ protein [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71556307...	206.0	[0..6]	[226..10]
gi\|28871120, gi\|... - gi\|28871120\|ref\|NP_793739.1\| tolQ protein [Pseudomonas syringae pv. tomato str. DC3000], gi\|28854370... gi\|237800221 - gi\|237800221\|ref\|ZP_04588682.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. oryzae str. ... tr\|F3G1F2\|F3G1F2... - MotA/TolQ/ExbB proton channel OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_00040 PE=3 SV=1 gi\|63255367, gi\|... - gi\|66044660\|ref\|YP_234501.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. syringae B728a]... tr\|Q87Y37\|Q87Y37... - TolQ protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=tolQ-2 PE=3 SV=1 gi\|213926186, gi... - gi\|213969188\|ref\|ZP_03397327.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. tomato T1], ...	205.0	[0..6]	[226..10]
tr\|E4R7V4\|E4R7V4... - TolQ OS=Pseudomonas putida (strain BIRD-1) GN=tolQ PE=3 SV=1 gi\|24982667, gi\|... - gi\|26987954\|ref\|NP_743379.1\| biopolymer transport protein TolQ [Pseudomonas putida KT2440], gi\|24982... gi\|166861680, gi... - gi\|167035192\|ref\|YP_001670423.1\| protein TolQ [Pseudomonas putida GB-1], gi\|166861680\|gb\|ABZ00088.1\|... tr\|I7CI79\|I7CI79... - Biopolymer transport protein TolQ OS=Pseudomonas putida (strain DOT-T1E) GN=tolQ PE=3 SV=1 gi\|5514776 - gi\|5514776\|emb\|CAB50778.1\| TolQ protein [Pseudomonas putida] gi\|119859089, gi... - gi\|170723157\|ref\|YP_001750845.1\| protein TolQ [Pseudomonas putida W619], gi\|169761160\|gb\|ACA74476.1\|... gi\|148546491, gi... - gi\|148546491\|ref\|YP_001266593.1\| Tol-Pal system, TolQ [Pseudomonas putida F1], gi\|148510549\|gb\|ABQ77...	204.0	[0..4]	[226..8]
gi\|37525404, gi\|... - gi\|37525404\|ref\|NP_928748.1\| colicin uptake protein TolQ [Photorhabdus luminescens subsp. laumondii ...	203.0	[0..3]	[228..2]
gi\|49081978 - gi\|49081978\|gb\|AAT50389.1\| PA0969 [synthetic construct]	203.0	[0..4]	[227..8]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQADMSFIGL FLQASLLVKF VMFTLLGLSI MSWTVILQRR SLLTGAKNKS AKFEDKFWSG  60
   61 VDLNRLYKEL SARPDNTGLE SLFVTGFKEY SRLNKLNSKV PDAVMDGTSR AMRVTLSREL 120
  121 EKLEANLPLL ATIGSTSPYI GLFGTVWGIM NSFIAIGSME NATLAMVAPG IAEALIATAM 180
  181 GLFAAIPAVI AYNRFATQVE KLEIAYANFM EEFSSILHRQ AYSEKEGA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.508638
Match:	PF01618.7
Description:	No description for PF01618.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits