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View Structure Prediction Details

Protein: gi|24348828, gi|...
Organism: Shewanella oneidensis MR-1
Length: 345 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348828, gi|....

Description E-value Query
Range
Subject
Range
gi|50932305, gi|... - gi|50932305|ref|XP_475680.1| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi|48475...
159.0 [0..35] [339..468]
gi|116309773, gi... - gi|116309961|emb|CAH66991.1| H0505F09.7 [Oryza sativa (indica cultivar-group)], gi|116309773|emb|CAH...
158.0 [0..34] [344..541]

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Predicted Domain #1
Region A:
Residues: [1-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNSNVALP LSISAGIHIG VIIILAIGID FTHKPEPVQQ VSAPAVKAVM VDQQQVANQV  60
   61 EKLKQEKRDT ERRERERQAE LERKAQEAKQ AREREQAQLK QLAEERKQQE IETQKANEAA 120
  121 KAAQLKQQQE KEKAQKAEAD RKLKEQERKL AEDAAQKAAE KRKVEEAAVA KAEADRKQKE 180
  181 AEAKAKAEAD AKAKADKAKA DAEAKAKAEA KAKADAKAKA DAEAKALAQQ EQEMADALAA 240
  241 EQAALSQTMN KQMQTEVGKY TAMIKSTIQR NLVVDESMRG KTCTVSVRLA NDGFVISSQT 300
  301 QGGDPNVCRA TKAAILKAGK LPVSPDPAVY NLMKEINLIV EPTFN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle