YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374045, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374045, gi|....

Description	E-value	Query Range	Subject Range
gi\|113888855, gi... - gi\|78692372\|ref\|ZP_00856910.1\| radical activating enzyme [Shewanella sp. MR-7], gi\|78508222\|gb\|EAP21...	203.0	[0..1]	[222..1]
gi\|113885079, gi... - gi\|82498025\|ref\|ZP_00883543.1\| radical activating enzyme [Shewanella sp. MR-4], gi\|82403993\|gb\|EAP44...	202.0	[0..1]	[222..1]
gi\|78688279, gi\|... - gi\|78688279\|ref\|ZP_00852988.1\| radical activating enzyme [Shewanella sp. ANA-3], gi\|78503985\|gb\|EAP1...	202.0	[0..1]	[222..1]
gi\|75230021, gi\|... - gi\|75230021\|ref\|ZP_00716531.1\| COG0602: Organic radical activating enzymes [Escherichia coli B7A], g...	202.0	[0..1]	[221..1]
gi\|49613001, gi\|... - gi\|50122475\|ref\|YP_051642.1\| hypothetical protein ECA3554 [Pectobacterium atrosepticum SCRI1043], gi...	201.0	[0..1]	[221..1]
gi\|113906808, gi... - gi\|160875275\|ref\|YP_001554591.1\| radical activating enzyme [Shewanella baltica OS195], gi\|160860797\|...	201.0	[0..1]	[222..1]
gi\|56129152, gi\|... - gi\|56414895\|ref\|YP_151970.1\| hypothetical protein SPA2807 [Salmonella enterica subsp. enterica serov... gi\|197363823, gi... - gi\|197363823\|ref\|YP_002143460.1\| hypothetical protein SSPA2615 [Salmonella enterica subsp. enterica ...	201.0	[0..1]	[221..1]
gi\|77816094, gi\|... - gi\|77816094\|ref\|ZP_00815302.1\| radical activating enzyme [Shewanella putrefaciens CN-32], gi\|7780896...	201.0	[0..1]	[222..1]
gi\|124547439, gi... - gi\|124547439\|ref\|ZP_01706339.1\| radical activating enzyme [Shewanella putrefaciens 200], gi\|12450927... gi\|120598962, gi... - gi\|82740652\|ref\|ZP_00903389.1\| radical activating enzyme [Shewanella sp. W3-18-1], gi\|82721993\|gb\|EA...	200.0	[0..1]	[222..1]
gi\|214003255 - gi\|214003255\|ref\|ZP_03413990.1\| hypothetical protein Salmonellentericaenterica_24491 [Salmonella ent... gi\|224469262, gi... - gi\|224584735\|ref\|YP_002638533.1\| hypothetical protein SPC_3001 [Salmonella enterica subsp. enterica ... gi\|213424925 - gi\|213424925\|ref\|ZP_03357675.1\| hypothetical protein SentesTyphi_03996 [Salmonella enterica subsp. e... gi\|213648292 - gi\|213648292\|ref\|ZP_03378345.1\| hypothetical protein SentesTy_13994 [Salmonella enterica subsp. ente... gi\|213852988 - gi\|213852988\|ref\|ZP_03382520.1\| hypothetical protein SentesT_09066 [Salmonella enterica subsp. enter... gi\|213981379 - gi\|213981379\|ref\|ZP_03408638.1\| hypothetical protein Salmonellaentericaenterica_46010 [Salmonella en... gi\|25511883, gi\|... - gi\|25511883\|pir\|\|AB0859 conserved hypothetical protein STY3080 [imported] - Salmonella enterica subs... gi\|16766257, gi\|... - gi\|16766257\|ref\|NP_461872.1\| hypothetical protein STM2951 [Salmonella typhimurium LT2], gi\|16421502\|... lcl\|NC_016856.1_... - [gene=ygcF] [protein=hypothetical protein] [protein_id=YP_005239065.1] [location=complement(3116367.... gi\|29138840, gi\|... - gi\|29143207\|ref\|NP_806549.1\| hypothetical protein t2852 [Salmonella enterica subsp. enterica serovar... gi\|16761723 - gi\|16761723\|ref\|NP_457340.1\| hypothetical protein STY3080 [Salmonella enterica subsp. enterica serov... gi\|161365236, gi... - gi\|161615872\|ref\|YP_001589837.1\| hypothetical protein SPAB_03664 [Salmonella enterica subsp. enteric... gi\|205324832, gi... - gi\|205324832\|gb\|EDZ12671.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205328757, gi... - gi\|205328757\|gb\|EDZ15521.1\| radical SAM domain protein [Salmonella enterica subsp. enterica serovar ... gi\|238909725 - gi\|238909725\|ref\|ZP_04653562.1\| hypothetical protein SentesTe_01135 [Salmonella enterica subsp. ente... gi\|205353891, gi... - gi\|205353891\|ref\|YP_002227692.1\| hypothetical protein SG2855 [Salmonella enterica subsp. enterica se... gi\|206710014, gi... - gi\|207858211\|ref\|YP_002244862.1\| hypothetical protein SEN2790 [Salmonella enterica subsp. enterica s... gi\|213022667 - gi\|213022667\|ref\|ZP_03337114.1\| hypothetical protein Salmonelentericaenterica_08538 [Salmonella ente... gi\|213163461 - gi\|213163461\|ref\|ZP_03349171.1\| hypothetical protein Salmoneentericaenterica_26915 [Salmonella enter... gi\|197250818, gi... - gi\|197250818\|ref\|YP_002147853.1\| radical SAM domain protein [Salmonella enterica subsp. enterica ser... gi\|197261663, gi... - gi\|197261663\|ref\|ZP_03161737.1\| radical SAM domain protein [Salmonella enterica subsp. enterica sero... gi\|197937997, gi... - gi\|198243481\|ref\|YP_002216919.1\| radical SAM domain protein [Salmonella enterica subsp. enterica ser... gi\|199604672, gi... - gi\|200387574\|ref\|ZP_03214186.1\| radical SAM domain protein [Salmonella enterica subsp. enterica sero... gi\|205342895, gi... - gi\|205342895\|gb\|EDZ29659.1\| radical SAM domain protein [Salmonella enterica subsp. enterica serovar ... gi\|194443979, gi... - gi\|194443979\|ref\|YP_002042196.1\| radical SAM domain protein [Salmonella enterica subsp. enterica ser... gi\|194406558, gi... - gi\|194448254\|ref\|YP_002046911.1\| radical SAM domain protein [Salmonella enterica subsp. enterica ser... gi\|194472830, gi... - gi\|194472830\|ref\|ZP_03078814.1\| radical SAM domain protein [Salmonella enterica subsp. enterica sero... gi\|205334576, gi... - gi\|205334576\|gb\|EDZ21340.1\| radical SAM domain protein [Salmonella enterica subsp. enterica serovar ... gi\|168242700, gi... - gi\|205338143\|gb\|EDZ24907.1\| radical SAM domain protein [Salmonella enterica subsp. enterica serovar ... gi\|168261911, gi... - gi\|205349084\|gb\|EDZ35715.1\| radical SAM domain protein [Salmonella enterica subsp. enterica serovar ... gi\|168463900, gi... - gi\|195633215\|gb\|EDX51629.1\| radical SAM domain protein [Salmonella enterica subsp. enterica serovar ...	200.0	[0..1]	[221..1]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYPVNEVFE TIQGEGVFTG VPAIFVRLQG CPVGCAWCDT KQTWDLLETN KVSPEQVITV  60
   61 DGTVGRWANH TAQSLIEAFH AKGYTARHVV ITGGEPCMYD LHELTHMLHR AGFATQIETS 120
  121 GTFEVKCDKD TWVTVSPKVN MKGGYPVLAQ ALNRANEIKH PIATQNHIDE LDELLSDIDV 180
  181 SAKTICLQPI SQKPRATELA MKVCIARNWR LSIQTHKYLN ID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.30103
Match:	1tv7A
Description:	Structure of the S-adenosylmethionine dependent Enzyme MoaA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.48331922124015	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: