YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374006, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	847 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374006, gi|....

Description	E-value	Query Range	Subject Range
gi\|78686675, gi\|... - gi\|78686675\|ref\|ZP_00851439.1\| Glucan 1,4-alpha-glucosidase [Shewanella sp. ANA-3], gi\|78505559\|gb\|E...	712.0	[0..22]	[847..16]
gi\|113884891, gi... - gi\|82497303\|ref\|ZP_00882859.1\| Glucan 1,4-alpha-glucosidase [Shewanella sp. MR-4], gi\|82404668\|gb\|EA...	698.0	[0..3]	[847..1]
gi\|78690875, gi\|... - gi\|78690875\|ref\|ZP_00855511.1\| Glucan 1,4-alpha-glucosidase [Shewanella sp. MR-7], gi\|78509716\|gb\|EA...	683.0	[0..3]	[847..1]
gi\|160861087, gi... - gi\|160875565\|ref\|YP_001554881.1\| glucan 1,4-alpha-glucosidase [Shewanella baltica OS195], gi\|1608610... gi\|151365475, gi... - gi\|153000857\|ref\|YP_001366538.1\| glucan 1,4-alpha-glucosidase [Shewanella baltica OS185], gi\|1513654...	667.0	[0..3]	[847..1]
gi\|75910396, gi\|... - gi\|75910396\|ref\|YP_324692.1\| glucan 1,4-alpha-glucosidase [Anabaena variabilis ATCC 29413], gi\|75704...	650.0	[0..80]	[847..69]
gi\|89949849, gi\|... - gi\|90020249\|ref\|YP_526076.1\| glucan 1,4-alpha-glucosidase [Saccharophagus degradans 2-40], gi\|899498...	649.0	[0..42]	[847..7]
gi\|69164088, gi\|... - gi\|69952621\|ref\|ZP_00640029.1\| Glucan 1,4-alpha-glucosidase [Shewanella frigidimarina NCIMB 400], gi...	630.0	[0..28]	[846..13]
gi\|17135406, gi\|... - gi\|17229078\|ref\|NP_485626.1\| hypothetical protein alr1586 [Nostoc sp. PCC 7120], gi\|17135406\|dbj\|BAB... gi\|25289332 - pir\|\|AD2004 hypothetical protein alr1586 [imported] - Nostoc sp. (strain PCC 7120)	625.0	[0..80]	[847..37]
gi\|69943650, gi\|... - gi\|91793359\|ref\|YP_563010.1\| glucan 1,4-alpha-glucosidase [Shewanella denitrificans OS217], gi\|91715...	598.0	[0..29]	[846..3]
gi\|88860072, gi\|... - gi\|88860072\|ref\|ZP_01134711.1\| glucoamylase [Pseudoalteromonas tunicata D2], gi\|88818066\|gb\|EAR27882...	597.0	[0..41]	[847..3]

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Predicted Domain #1

Region A:
Residues: [1-847]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMPFTEQPK QDCGQLKQHS SSLTLKPIAL AITASLIGLA SLSACSPIAD KSASSTTSNA  60
   61 VSNNEINTAS YNIAPGAPGK APTWAFSGKT GIGTSYEPYT QGQYQDSQQN PISRVWFSIA 120
  121 QGILTETMFG LIHNAQLKEL QFVITGNGFV DTEKDNTISS IEYLDTDANG RPQSLAYKII 180
  181 NRDVEGKYQI EKHIFTDPGR DTLVMRVTFT AFEAGITPHL YVNPHIDNAG ANDIGRIDHQ 240
  241 ALIAYTAAPH SSVMTVKSDI NFVRATTGFE GISDGLADLA DNGTLDTLYS ATSAPDNRTQ 300
  301 GNIAFTASYP EVTPNQPLNI NLAIGFGHDE LSSLTNAKAT LNAGYDAVLG QYNAGWRSYL 360
  361 QSLPAIAGMA KSTTDNGKLL YTSAMVLKAQ EDKTYAGALI ASLSNPWGDT VSAITPSTGY 420
  421 KAVWPRDFYQ CAMAFLAMGD TQTPKVAFEY LKKVQVSDKT SGFSGTPGWF LQKTHVDGQI 480
  481 EWVGVQLDQT AMPIMLGWKL WQAGGLSQTE LSYWYQEMLK GAADFLVSGG EVNLDWNHTP 540
  541 VTPPKTQQER WEEQAGFSPS TTAAVIAGLV TASDIAKAVN DLNASQRYLD SAKTLNQQLE 600
  601 KHLVTTQGLL TDSQGVSTPY YLRLSPHGEP NTATKLAANN GKAGLDQRQI LDAGFLELVR 660
  661 YGVRGATDKL INQSLALVDN TKLEDNLRLK YSFTAKDGSS VPGFRRYGND GYGEDTVTGA 720
  721 NYAESGGNSD NQRGRVWPFF TGERGHFELA LASAKGELTG TKGQQTKQQL INTYVQGMET 780
  781 FANAGMMLPE QAWDGVGNAT RYQYRLGQGT NSATPLAWTH AEYIKLVRSM NDGQLWDHYP 840
  841 IVPETLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	159.0
Match:	1lf6A
Description:	Bacterial glucoamylase, C-terminal domain; Bacterial glucoamylase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
racemase and epimerase activity, acting on carbohydrates and derivatives	1.21567860634685	bayes_pls_golite062009
racemase and epimerase activity	1.19295069153058	bayes_pls_golite062009
catalytic activity	1.14137378674629	bayes_pls_golite062009
trehalase activity	0.85077242065624	bayes_pls_golite062009
isomerase activity	0.62004466537384	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: