YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373790, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	567 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373790, gi|....

Description	E-value	Query Range	Subject Range
gi\|89085953, gi\|... - gi\|89099344\|ref\|ZP_01172221.1\| PtsI [Bacillus sp. NRRL B-14911], gi\|89085953\|gb\|EAR65077.1\| PtsI [Ba...	624.0	[0..3]	[565..4]
gi\|89149083, gi\|... - gi\|89202891\|ref\|ZP_01181596.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus subsp...	617.0	[0..1]	[564..3]
PT1_LISIN - Phosphoenolpyruvate-protein phosphotransferase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN... PT1_LISIN - Phosphoenolpyruvate-protein phosphotransferase OS=Listeria innocua GN=ptsI PE=3 SV=1	616.0	[0..2]	[566..4]
gi\|11596364 - gi\|11596364\|gb\|AAG38584.1\|AF316496_5 enzyme I [Staphylococcus xylosus]	616.0	[0..3]	[566..5]
gi\|133736002, gi... - gi\|254931386\|ref\|ZP_05264745.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogen... gi\|254911688 - gi\|254911688\|ref\|ZP_05261700.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogen... gi\|224502682 - gi\|224502682\|ref\|ZP_03670989.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogen... gi\|254936014 - gi\|254936014\|ref\|ZP_05267711.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogen... PT1_LISMO - Phosphoenolpyruvate-protein phosphotransferase OS=Listeria monocytogenes GN=ptsI PE=3 SV=2 gi\|224500819 - gi\|224500819\|ref\|ZP_03669168.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogen... gi\|217964897, gi... - gi\|217964897\|ref\|YP_002350575.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytoge... gi\|47094137, gi\|... - gi\|47094137\|ref\|ZP_00231858.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogene... gi\|126941573, gi... - gi\|254898823\|ref\|ZP_05258747.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogen... gi\|46880502, gi\|... - gi\|46907235\|ref\|YP_013624.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogenes ... gi\|254832251, gi... - gi\|254832251\|ref\|ZP_05236906.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogen... gi\|254823725 - gi\|254823725\|ref\|ZP_05228726.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogen... PT1_LISMO - Phosphoenolpyruvate-protein phosphotransferase OS=Listeria monocytogenes serovar 1/2a (strain ATCC B... gi\|153166311, gi... - gi\|254872954\|ref\|ZP_05245664.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogen... gi\|254852498 - gi\|254852498\|ref\|ZP_05241846.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogen... gi\|47015293, gi\|... - gi\|47096335\|ref\|ZP_00233931.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogene... gi\|254827948, gi... - gi\|254827948\|ref\|ZP_05232635.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogen... gi\|254878406 - gi\|254878406\|ref\|ZP_05251116.1\| phosphoenolpyruvate-protein phosphotransferase [Listeria monocytogen...	616.0	[0..2]	[566..4]
gi\|52785363, gi\|... - gi\|52785363\|ref\|YP_091192.1\| PtsI [Bacillus licheniformis ATCC 14580], gi\|52347865\|gb\|AAU40499.1\| Pt...	615.0	[0..1]	[565..2]
gi\|72495531, gi\|... - gi\|73663016\|ref\|YP_301797.1\| phosphoenolpyruvate-protein phosphotransferase [Staphylococcus saprophy...	614.0	[0..3]	[566..5]
gi\|228625589, gi... - gi\|229157632\|ref\|ZP_04285707.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus ATCC... gi\|229140784, gi... - gi\|229140784\|ref\|ZP_04269329.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus BDRD... gi\|228585332, gi... - gi\|229198172\|ref\|ZP_04324881.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus m129... gi\|228597193, gi... - gi\|229186293\|ref\|ZP_04313459.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus BGSC... gi\|254721651 - gi\|254721651\|ref\|ZP_05183440.1\| phosphoenolpyruvate-protein phosphotransferase [Bacillus anthracis s... gi\|49478507, gi\|... - gi\|49478507\|ref\|YP_038108.1\| phosphoenolpyruvate-protein phosphotransferase [Bacillus thuringiensis ... gi\|47565930, gi\|... - gi\|47565930\|ref\|ZP_00236969.1\| phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus G9241... gi\|196030440, gi... - gi\|196038717\|ref\|ZP_03106025.1\| phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus NVH0... gi\|196023383, gi... - gi\|196045943\|ref\|ZP_03113172.1\| phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus 03BB... gi\|195992518, gi... - gi\|196034979\|ref\|ZP_03102386.1\| phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus W], ... gi\|222097498, gi... - gi\|222097498\|ref\|YP_002531555.1\| phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus Q1]... gi\|206977395, gi... - gi\|206977395\|ref\|ZP_03238291.1\| phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus H308... gi\|217961540, gi... - gi\|217961540\|ref\|YP_002340110.1\| phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus AH1... gi\|228916688, gi... - gi\|228916688\|ref\|ZP_04080253.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus thuringiens... gi\|228935368, gi... - gi\|228935368\|ref\|ZP_04098188.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus thuringiens... gi\|228929097, gi... - gi\|228929097\|ref\|ZP_04092124.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus thuringiens... gi\|228772467, gi... - gi\|228987238\|ref\|ZP_04147359.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus thuringiens... gi\|228947768, gi... - gi\|228947768\|ref\|ZP_04110055.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus thuringiens... gi\|229123571, gi... - gi\|229123571\|ref\|ZP_04252766.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus 95/8... gi\|229093106, gi... - gi\|229093106\|ref\|ZP_04224228.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus Rock...	614.0	[0..1]	[564..3]
gi\|228960315, gi... - gi\|228960315\|ref\|ZP_04121968.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus thuringiens... gi\|29897692, gi\|... - gi\|30022135\|ref\|NP_833766.1\| phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus ATCC 14... gi\|218235993, gi... - gi\|218235993\|ref\|YP_002368852.1\| phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus B42... gi\|228653934, gi... - gi\|229129329\|ref\|ZP_04258300.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus BDRD... gi\|228671904, gi... - gi\|229111522\|ref\|ZP_04241073.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus Rock... gi\|228701927, gi... - gi\|229081305\|ref\|ZP_04213808.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus Rock... gi\|206971003, gi... - gi\|206971003\|ref\|ZP_03231954.1\| phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus AH11... gi\|229071553, gi... - gi\|229071553\|ref\|ZP_04204771.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus F651... gi\|228591211, gi... - gi\|229192261\|ref\|ZP_04319226.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus ATCC... gi\|229180327, gi... - gi\|229180327\|ref\|ZP_04307670.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus 1725... gi\|228631213, gi... - gi\|229152251\|ref\|ZP_04280444.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus m155... gi\|228636793, gi... - gi\|229146623\|ref\|ZP_04274990.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus BDRD...	613.0	[0..1]	[564..3]
gi\|218899209, gi... - gi\|218899209\|ref\|YP_002447620.1\| phosphoenolpyruvate-protein phosphotransferase [Bacillus cereus G98... gi\|228902559, gi... - gi\|228902559\|ref\|ZP_04066710.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus thuringiens... gi\|74490159, gi\|... - gi\|75762349\|ref\|ZP_00742226.1\| Phosphoenolpyruvate-protein phosphotransferase [Bacillus thuringiensi...	613.0	[0..1]	[564..3]

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Predicted Domain #1

Region A:
Residues: [1-567]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITGIIVSS GIAFGKALHL NHCENHLDYR PIPLSRIPLQ QSKFLKALQA LKQQLSLSQA  60
   61 KLDPESENYQ LIEADLLLLD DDELIEQVKE AIRTLQLSAS VAVERIFAHQ ANELESLDDP 120
  121 YLANRAQDVR CLGQRIVTAI NGRLEQGLAD LSEATILLAQ DLTPAEFALL PKEHISGIVL 180
  181 KTGGLTSHTA ILARAAGIPA MLSCQFDAEF IPNNTPLVLD ALSGVLYVNP EPEQQARLTV 240
  241 TLHHEQARRQ ALQTYRDVPA QTQDGHHVGL LANVGNLNEI THVKDEGADG IGLFRTEFML 300
  301 MNTSTLPDEK AQYNLYCEAL HALDGKTFTI RTLDIGADKE LPCLCQNIED NPALGQRGVR 360
  361 YTLAHPELFK TQLRAILRAA NHGPIRLMFP MVNQVEELDE IFKLIAECQD ALEEEEKGYG 420
  421 ELSYGIVVET PAAVLNLASM LPRLDFVSIG TNDLTQYAMA ADRTNPQLTK DYPSLSPAIL 480
  481 HLINMTITQA KATGVTVSLC GELASSPQMA PLLVGMGLDE LSVNLSSLLE VKAAICQGEL 540
  541 AKFSELAHTA MQQNRISDLQ QCITNYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	177.0
Match:	2hroA
Description:	No description for 2hroA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits