YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348152, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	404 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348152, gi|....

Description	E-value	Query Range	Subject Range
gi\|67924848, gi\|... - gi\|67924848\|ref\|ZP_00518244.1\| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH 8...	296.0	[0..7]	[401..7]
gi\|98662148 - gi\|98662148\|dbj\|GAA00924.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	295.0	[0..8]	[402..1]
gi\|77685416, gi\|... - gi\|77685416\|ref\|ZP_00800816.1\| Fmu, rRNA SAM-dependent methyltransferase:Nop2p:NusB antitermination ...	290.0	[0..8]	[402..1]
gi\|67874767, gi\|... - gi\|67874767\|ref\|ZP_00504380.1\| Fmu, rRNA SAM-dependent methyltransferase [Clostridium thermocellum A...	287.0	[0..10]	[404..4]
gi\|88925497, gi\|... - gi\|88944826\|ref\|ZP_01148049.1\| Fmu, rRNA SAM-dependent methyltransferase:NusB antitermination factor...	287.0	[0..4]	[402..1]
gi\|77978258, gi\|... - gi\|77978258\|ref\|ZP_00833690.1\| COG0144: tRNA and rRNA cytosine-C5-methylases [Yersinia intermedia AT...	287.0	[0..4]	[402..1]
RSMB_ECOL5 - Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G...	286.0	[0..4]	[402..1]
gi\|114845457, gi... - gi\|167040389\|ref\|YP_001663374.1\| sun protein [Thermoanaerobacter sp. X514], gi\|166854629\|gb\|ABY93038... gi\|242257057, gi... - gi\|242257057\|ref\|ZP_04801934.1\| sun protein [Thermoanaerobacter sp. X513], gi\|242231456\|gb\|EES33790....	286.0	[0..8]	[403..1]
gi\|241884584, gi... - gi\|241902992\|ref\|ZP_04787721.1\| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1], gi\|241... gi\|76587519, gi\|... - gi\|76797109\|ref\|ZP_00779449.1\| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Thermoanaerobacter e...	285.0	[0..8]	[403..1]
RSMB_PHOLL - Ribosomal RNA small subunit methyltransferase B OS=Photorhabdus luminescens subsp. laumondii GN=rsmB... RSMB_PHOLL - Ribosomal RNA small subunit methyltransferase B OS=Photorhabdus luminescens subsp. laumondii (strain...	284.0	[0..4]	[402..1]

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Predicted Domain #1

Region A:
Residues: [1-404]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSPLSASS NELVINILAM VLSEGKPLDR AYSQHFSGLK LVPAEQARIT TVTGDILRRL  60
   61 NLYCFLADIK PEEMERLGSK LLNVWHLFHE LELPKMQYSL PVDPDDLVAR IEQAKTNPVL 120
  121 WDGCPEWLDT MGREQLGASW EKERAALNRP PKRFLRVNGL KVSRDELVQK LATEFVSTQV 180
  181 VDSVDSALEV TSDSALFRTN SFKEGLFEQQ DAGSQRVAAA LDAKPGMRVI DACAGAGGKT 240
  241 LHIAAQMQGK GRLLAMDVEQ WKLDNLKERA RRNGAHNIET RLIVGSKTIK RLKLTADRVL 300
  301 LDVPCSGLGV LKRNPDAKWR DTADRLPVLM ELQKHILSSY SRMVKVGGIV VYATCSIFPC 360
  361 ENRGQVDAFL AENPNFRLLE DETISPADTG FDGFYLAKLE RIQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.154902
Match:	1sqfA
Description:	The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.64500705012502	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.57389022626587	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.74830027382001	bayes_pls_golite062009
RNA methyltransferase activity	3.6174490060285	bayes_pls_golite062009
N-methyltransferase activity	3.00112136063228	bayes_pls_golite062009
rRNA methyltransferase activity	2.80578045927127	bayes_pls_golite062009
protein methyltransferase activity	2.74535979387581	bayes_pls_golite062009
transferase activity	2.42370637689376	bayes_pls_golite062009
DNA-methyltransferase activity	1.8182614465692	bayes_pls_golite062009
transcription termination factor activity	1.81209017364408	bayes_pls_golite062009
catalytic activity	1.62377578202456	bayes_pls_golite062009
histone methyltransferase activity	1.42140847541194	bayes_pls_golite062009
arginine N-methyltransferase activity	1.40233857644962	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.40233857644962	bayes_pls_golite062009
tRNA methyltransferase activity	1.32437128142157	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.88654745691593	bayes_pls_golite062009
rRNA (uridine) methyltransferase activity	0.75904932606473	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	0.72946673557525	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	0.67380437956274	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	0.62885479399246	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.355464145533041	bayes_pls_golite062009
rRNA (cytosine) methyltransferase activity	0.346042596102079	bayes_pls_golite062009
O-methyltransferase activity	0.32686871890222	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: