YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373474, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373474, gi|....

Description	E-value	Query Range	Subject Range
Coq2-PA - The gene Coenzyme Q biosynthesis protein 2 is referred to in FlyBase by the symbol Dmel\Coq2 (CG9613... gi\|220949886 - gi\|220949886\|gb\|ACL87486.1\| Coq2-PA [synthetic construct]	185.0	[0..2]	[288..78]
COQ2_DROPS - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=... gi\|125775189, gi... - gi\|54638587\|gb\|EAL27989.1\| GA21912 [Drosophila pseudoobscura pseudoobscura], gi\|125775189\|ref\|XP_001...	185.0	[0..2]	[288..84]
COQ2_AEDAE - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1	180.0	[0..3]	[284..118]
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	180.0	[0..3]	[284..978]
gi\|71005862, gi\|... - gi\|71005862\|ref\|XP_757597.1\| hypothetical protein UM01450.1 [Ustilago maydis 521], ref\|XP_399065.1\| ...	177.0	[0..2]	[286..633]
gi\|73956024 - gi\|73956024\|ref\|XP_546634.2\| PREDICTED: similar to heme A:farnesyltransferase [Canis familiaris]	176.0	[0..3]	[271..499]
gi\|114593901 - gi\|114593901\|ref\|XP_526592.2\| PREDICTED: para-hydroxybenzoate-polyprenyltransferase, mitochondrial i...	176.0	[0..1]	[284..121]
gi\|115732277, gi... - gi\|115898775\|ref\|XP_792747.2\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|11...	176.0	[0..1]	[284..61]
COQ2_BOVIN - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1	176.0	[0..1]	[284..71]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPWILAIRP RTLPAAIGPL LIGNILALHL ERFSWLIAAT SMLCAILLQI AVNLANDYFD  60
   61 FKNGIDTAER IGPVRVTQSG MIPPNTVRNA MVLCLLLALA VGSYLIWHGG WPIAILAAAA 120
  121 ILGALGYSGG PYPLASHGLG EVAAFVFFGL VAVVGSYYLQ AGDTTINAWL LGCAIGLFNA 180
  181 A

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [182-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IMLVNNTRDI RTDTQAGKHT LAVRIGEAQA KVLYQALIYL PFGLVIAGFL LGILPGLPVL  60
   61 LAGLSLLIAR KLSSDFYAVS GEALNPLLGR TAKLTMIFST LFSVGLVFTA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits