YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373420, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	58 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373420, gi|....

Description	E-value	Query Range	Subject Range
gi\|71737560, gi\|... - gi\|71737560\|ref\|YP_274297.1\| ribosome modulation factor-related protein [Pseudomonas syringae pv. ph...	93.0	[0..1]	[55..38]
gi\|66045347, gi\|... - gi\|66045347\|ref\|YP_235188.1\| ribosome modulation factor [Pseudomonas syringae pv. syringae B728a], g... gi\|28869510, gi\|... - gi\|28869510\|ref\|NP_792129.1\| ribosome modulation factor-related protein [Pseudomonas syringae pv. to... RMF_PSE14 - Ribosome modulation factor OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=rmf... tr\|Q883P0\|Q883P0... - Ribosome modulation factor OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=rmf PE=3 SV=1	91.0	[0..1]	[55..1]
tr\|F2KEI4\|F2KEI4... - Ribosome modulation factor OS=Pseudomonas brassicacearum (strain NFM421) GN=rmf PE=3 SV=1 gi\|77458014, gi\|... - gi\|77458014\|ref\|YP_347519.1\| ribosome modulation factor [Pseudomonas fluorescens Pf0-1], gi\|77382017...	90.0	[0..1]	[55..1]
gi\|145564426, gi... - gi\|77815818\|ref\|ZP_00815036.1\| Ribosome modulation factor [Shewanella putrefaciens CN-32], gi\|778092... gi\|124547155, gi... - gi\|124547155\|ref\|ZP_01706108.1\| ribosome modulation factor [Shewanella putrefaciens 200], gi\|1245094... gi\|82721831, gi\|... - gi\|82740845\|ref\|ZP_00903579.1\| ribosome modulation factor [Shewanella sp. W3-18-1], gi\|82721831\|gb\|E... gi\|160875793, gi... - gi\|160875793\|ref\|YP_001555109.1\| ribosome modulation factor [Shewanella baltica OS195], gi\|160861315... gi\|125997984, gi... - gi\|68544590\|ref\|ZP_00584222.1\| Ribosome modulation factor [Shewanella baltica OS155], gi\|68517705\|gb... gi\|217498090, gi... - gi\|217972955\|ref\|YP_002357706.1\| ribosome modulation factor [Shewanella baltica OS223], gi\|217498090... gi\|153001123, gi... - gi\|153001123\|ref\|YP_001366804.1\| ribosome modulation factor [Shewanella baltica OS185], gi\|151365741...	90.0	[0..1]	[58..1]
gi\|67084794, gi\|... - gi\|67158502\|ref\|ZP_00419447.1\| Ribosome modulation factor [Azotobacter vinelandii AvOP], gi\|67084794... gi\|67158502 - gi\|67158502\|ref\|ZP_00419447.1\| Ribosome modulation factor [Azotobacter vinelandii AvOP]	90.0	[0..1]	[55..1]
gi\|15598245, gi\|... - gi\|9949155\|gb\|AAG06437.1\|AE004730_1 ribosome modulation factor [Pseudomonas aeruginosa PAO1], gi\|155... gi\|150960853, gi... - gi\|152985695\|ref\|YP_001347461.1\| ribosome modulation factor [Pseudomonas aeruginosa PA7], gi\|1509608... gi\|218770973, gi... - gi\|218890750\|ref\|YP_002439614.1\| ribosome modulation factor [Pseudomonas aeruginosa LESB58], gi\|2187... gi\|194547006, gi... - gi\|254236021\|ref\|ZP_04929344.1\| ribosome modulation factor [Pseudomonas aeruginosa C3719], gi\|194547... gi\|11352507 - pir\|\|H83262 ribosome modulation factor PA3049 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|116051049, gi... - gi\|116051049\|ref\|YP_790122.1\| ribosome modulation factor [Pseudomonas aeruginosa UCBPP-PA14], gi\|115... gi\|254241752, gi... - gi\|254241752\|ref\|ZP_04935074.1\| ribosome modulation factor [Pseudomonas aeruginosa 2192], gi\|1945527...	89.0	[0..1]	[55..1]
gi\|27365923, gi\|... - gi\|27365923\|ref\|NP_761451.1\| ribosome modulation factor [Vibrio vulnificus CMCP6], gi\|27362072\|gb\|AA...	89.0	[0..1]	[56..9]
gi\|49082286 - gi\|49082286\|gb\|AAT50543.1\| PA3049 [synthetic construct]	89.0	[0..1]	[55..1]
gi\|148548850, gi... - gi\|82737953\|ref\|ZP_00900795.1\| ribosome modulation factor-related protein [Pseudomonas putida F1], g... gi\|95109895, gi\|... - gi\|95109895\|emb\|CAK14600.1\| ribosome modulation factor [Pseudomonas entomophila L48], gi\|104780908\|r... gi\|167032617, gi... - gi\|167032617\|ref\|YP_001667848.1\| ribosome modulation factor [Pseudomonas putida GB-1], gi\|166859105\|... gi\|170720800, gi... - gi\|170720800\|ref\|YP_001748488.1\| ribosome modulation factor [Pseudomonas putida W619], gi\|169758803\|... gi\|95109895 - gi\|95109895\|emb\|CAK14600.1\| ribosome modulation factor [Pseudomonas entomophila L48]	88.0	[0..1]	[55..1]
gi\|114563823, gi... - gi\|69953039\|ref\|ZP_00640331.1\| Ribosome modulation factor [Shewanella frigidimarina NCIMB 400], gi\|6...	87.0	[0..1]	[58..1]

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Predicted Domain #1

Region A:
Residues: [1-58]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRQKRDRLD RAFSKGFQAG IGGRSKELCP YANLDSRSQW LGGWREGVDG RVNGLFNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	2jrmA
Description:	No description for 2jrmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits