YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373387, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	936 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373387, gi|....

Description	E-value	Query Range	Subject Range
gi\|77808466, gi\|... - gi\|77816562\|ref\|ZP_00815740.1\| TonB-dependent receptor [Shewanella putrefaciens CN-32], gi\|77808466\|...	306.0	[0..44]	[936..1]
gi\|21109934, gi\|... - gi\|21244285\|ref\|NP_643867.1\| TonB-dependent receptor [Xanthomonas axonopodis pv. citri str. 306], gi...	296.0	[0..1]	[936..1]
gi\|21114660, gi\|... - gi\|21232834\|ref\|NP_638751.1\| TonB-dependent receptor [Xanthomonas campestris pv. campestris str. ATC... gi\|167731947, gi... - gi\|188990187\|ref\|YP_001902197.1\| TonB-dependent outer membrane receptor precursor [Xanthomonas campe...	294.0	[0..1]	[936..1]
gi\|66767095, gi\|... - gi\|66767095\|ref\|YP_241857.1\| TonB-dependent receptor [Xanthomonas campestris pv. campestris str. 800...	293.0	[0..1]	[936..1]
gi\|78037671, gi\|... - gi\|78049241\|ref\|YP_365416.1\| TonB-dependent outer membrane receptor [Xanthomonas campestris pv. vesi...	292.0	[0..1]	[936..1]
gi\|12720534, gi\|... - gi\|15602165\|ref\|NP_245237.1\| hypothetical protein PM0300 [Pasteurella multocida subsp. multocida str...	266.0	[0..1]	[936..1]
gi\|88772569, gi\|... - gi\|88796117\|ref\|ZP_01111800.1\| TonB-dependent receptor [Alteromonas macleodii 'Deep ecotype'], gi\|88...	264.0	[0..1]	[936..1]

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Predicted Domain #1

Region A:
Residues: [1-681]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKNNLLAKS VRFALIGGVA ATALNVPLVM AADEAGADKK VERIEVTGSR IKRTDMEAAS  60
   61 PVLSMNRDEI EATGMISVGD ILQTIPAAGS ALNTAFNNGG DGSTNMDLRN LGSQRLLVLV 120
  121 NGKRWISSLG STVDLNTIPT STIERIDVLK DGASAVYGSD AIAGVVNIIT RKNFEGVEVS 180
  181 VYGGQNAKYD DGRQYTADFT VGSVSEKGGL LFNMAHVTQQ PIWAGDRDIS DTGYSSTADN 240
  241 TRIRVKGSQL NQANQDALAA IGKPNSSGIY DYMSKEGTGA NVGMDQFRPR TGSDVYNFAP 300
  301 DNYLSTPQNR NSFYVQGFYD ISDNLRVVSD FMMTNRKSSQ ELAPMPLTLG ASFGAAASRV 360
  361 DIGGNNIYNP FGETLYGDSA RAVANGKPVG YVPYALQRRM VEAGSRQYNQ NDTTYRAMVG 420
  421 LEGNINDNWS WTASYIYGQN NQDVLTTGLL NLTRINQALG DNCNASNGCV ALNLFGGPGS 480
  481 VTQDMVDYIT FDSVSRSGLT MKDYTFNIAG DLFDLPAGPV GLAFGLERRE ESGFDTPDPL 540
  541 TVTGESSGNQ RDATSGGFRL DEAYAELAIP VIESLLITPA VRVSDHDAYG NNTTGKVGAE 600
  601 FRPMDDMLLR GTWAQGYRAP SISDLYAGSA DSYPTWNDPC NTRDSKGNVL NISGLPGCAG 660
  661 VPDGYRQANT QIRISQVSSP D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.221849
Match:	2iahA
Description:	No description for 2iahA was found.

Predicted Domain #2

Region A:
Residues: [682-936]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKPETSESYT FGTVYNPSWL EGAEFTVDYY NIKVEDAIGR YGHTTIAREC ATGDKVSSCD  60
   61 KIDRDSLGNI VDLRNFLQNA GTYEVEGIDF FTAYRFPETS FGSFKTSLDL AYVLGNEFDG 120
  121 EDRAGIQYGD GGFPELKGSL NIDWAMGDWD AHWKMRYVGE LTSDFYANDP ANYDFYKDNG 180
  181 YRETFSAYMV HNVSVGYNIE DYNTKVSLGI NNLFATEPQA EGPTNNEALS SNNFSVTEYD 240
  241 VNMDRFIYLR ATTKF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.92
Match:	1fepA
Description:	Ferric enterobactin receptor FepA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits