YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373382, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373382, gi|....

Description	E-value	Query Range	Subject Range
gi\|113885491, gi... - gi\|113970807\|ref\|YP_734600.1\| primosomal replication protein N'', putative [Shewanella sp. MR-4], gi...	234.0	[0..1]	[222..1]
gi\|78509203, gi\|... - gi\|78691410\|ref\|ZP_00856028.1\| primosomal replication protein N'', putative [Shewanella sp. MR-7], g...	233.0	[0..1]	[222..1]
gi\|78688181, gi\|... - gi\|78688181\|ref\|ZP_00852898.1\| primosomal replication protein N'', putative [Shewanella sp. ANA-3], ...	233.0	[0..1]	[222..1]
gi\|124507955, gi... - gi\|124549313\|ref\|ZP_01707613.1\| primosomal replication protein N'', putative [Shewanella putrefacien... gi\|120559486, gi... - gi\|82744033\|ref\|ZP_00906637.1\| primosomal replication protein N'', putative [Shewanella sp. W3-18-1]... gi\|77808838, gi\|... - gi\|77816217\|ref\|ZP_00815419.1\| primosomal replication protein n'', putative [Shewanella putrefaciens...	221.0	[0..1]	[222..1]
gi\|113950318, gi... - gi\|113950318\|ref\|ZP_01435948.1\| primosomal replication protein N'', putative [Shewanella baltica OS1...	219.0	[0..1]	[222..4]
gi\|68543689, gi\|... - gi\|68543689\|ref\|ZP_00583384.1\| primosomal replication protein n'', putative [Shewanella baltica OS15... gi\|153000145, gi... - gi\|153000145\|ref\|YP_001365826.1\| primosomal replication protein N'', putative [Shewanella baltica OS... gi\|160874767, gi... - gi\|160874767\|ref\|YP_001554083.1\| primosomal replication protein N'', putative [Shewanella baltica OS... gi\|146862759, gi... - gi\|217973887\|ref\|YP_002358638.1\| primosomal replication protein N'', putative [Shewanella baltica OS...	216.0	[0..3]	[222..1]
gi\|229343542, gi... - gi\|229518853\|ref\|ZP_04408296.1\| primosomal replication protein N prime prime [Vibrio cholerae RC9], ... gi\|229607607, gi... - gi\|229607607\|ref\|YP_002878255.1\| primosomal replication protein N prime prime [Vibrio cholerae MJ-12... gi\|254848943, gi... - gi\|75830410\|ref\|ZP_00759689.1\| COG3923: Primosomal replication protein N'' [Vibrio cholerae MO10], g... gi\|15641859, gi\|... - gi\|9656386\|gb\|AAF95005.1\| primosomal replication protein N`` [Vibrio cholerae O1 biovar El Tor str. ... gi\|229351680, gi... - gi\|229511715\|ref\|ZP_04401194.1\| primosomal replication protein N prime prime [Vibrio cholerae B33], ... gi\|11355819 - pir\|\|D82148 primosomal replication factor N VC1857 [similarity] - Vibrio cholerae (strain N16961 ser...	184.0	[0..1]	[215..1]
gi\|229332894, gi... - gi\|229529120\|ref\|ZP_04418510.1\| primosomal replication protein N prime prime [Vibrio cholerae 12129(... gi\|254286784, gi... - gi\|254286784\|ref\|ZP_04961738.1\| primosomal replication protein N`` [Vibrio cholerae AM-19226], gi\|19... gi\|153825184, gi... - gi\|153825184\|ref\|ZP_01977851.1\| primosomal replication protein N`` [Vibrio cholerae MZO-2], gi\|14974... gi\|75814261, gi\|... - gi\|75814261\|ref\|ZP_00744876.1\| COG3923: Primosomal replication protein N'' [Vibrio cholerae V52], gi... gi\|227081986, gi... - gi\|227081986\|ref\|YP_002810537.1\| primosomal replication protein N'' [Vibrio cholerae M66-2], gi\|2270... gi\|146316622, gi... - gi\|75827182\|ref\|ZP_00756617.1\| COG3923: Primosomal replication protein N'' [Vibrio cholerae O395], g... gi\|126509340, gi... - gi\|153820122\|ref\|ZP_01972789.1\| primosomal replication protein N`` [Vibrio cholerae NCTC 8457], gi\|1... gi\|229523875, gi... - gi\|229523875\|ref\|ZP_04413280.1\| primosomal replication protein N prime prime [Vibrio cholerae bv. al... gi\|124118493, gi... - gi\|153222992\|ref\|ZP_01953582.1\| primosomal replication protein N`` [Vibrio cholerae MAK 757], gi\|124... gi\|229508046, gi... - gi\|229508046\|ref\|ZP_04397551.1\| primosomal replication protein N prime prime [Vibrio cholerae BX 330...	183.0	[0..1]	[215..1]
gi\|91793783, gi\|... - gi\|91793783\|ref\|YP_563434.1\| primosomal replication protein N'', putative [Shewanella denitrificans ...	175.0	[0..3]	[222..1]
gi\|68548060, gi\|... - gi\|68548060\|ref\|ZP_00587579.1\| primosomal replication protein n'', putative [Shewanella amazonensis ...	175.0	[0..8]	[222..6]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLNTSQLIS TLKNQLKTLE QEVLQHDSHL VPSQRKLLQD IERFNQSLFI QHGAQLMPCI  60
   61 EQIRSSIVQL EKQIALKLAP QTIAMSCERI QDRFTAVKRA LLTTSIDVKS KNQQRASKRA 120
  121 RFAQQQNQSH QASGFAWIAS NVLQNSHEIY AELNKHLNWA KKFEQKIAEM ESKLENCHSA 180
  181 DKISLQNDIL LMHRRLGKCR QAISYIEDRI QAFERPHQSH NR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.83
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits