YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347491, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	753 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347491, gi|....

Description	E-value	Query Range	Subject Range
gi\|56419437, gi\|... - gi\|56419437\|ref\|YP_146755.1\| heavy metal-transporting ATPase [Geobacillus kaustophilus HTA426], gi\|5...	633.0	[0..2]	[753..72]
gi\|42782808, gi\|... - gi\|42782808\|ref\|NP_980055.1\| heavy metal-transporting ATPase [Bacillus cereus ATCC 10987], gi\|427387...	633.0	[0..3]	[753..74]
gi\|89897256, gi\|... - gi\|89897256\|ref\|YP_520743.1\| hypothetical protein DSY4510 [Desulfitobacterium hafniense Y51], gi\|893...	632.0	[0..5]	[752..75]
gi\|145408869, gi... - gi\|82499630\|ref\|ZP_00885070.1\| ATPase, E1-E2 type:Copper ion-binding:Copper-translocating P-type ATP...	631.0	[0..4]	[752..78]
gi\|25290734 - pir\|\|AH2543 cation-transporting ATPase alr7635 [imported] - Nostoc sp. (strain PCC 7120) plasmid pC... gi\|17158771, gi\|... - gi\|17158771\|ref\|NP_478282.1\| cation-transporting ATPase [Nostoc sp. PCC 7120], gi\|17134720\|dbj\|BAB77...	631.0	[0..1]	[752..1]
gi\|20808818 - gi\|20808818\|ref\|NP_623989.1\| Cation transport ATPase [Thermoanaerobacter tengcongensis MB4] gi\|20517469, gi\|... - gi\|20808818\|ref\|NP_623989.1\| cation transport ATPase [Thermoanaerobacter tengcongensis MB4], gi\|2051...	629.0	[0..3]	[753..72]
gi\|242258479, gi... - gi\|242258479\|ref\|ZP_04803277.1\| copper-translocating P-type ATPase [Thermoanaerobacter sp. X513], gi... gi\|241903577, gi... - gi\|241903577\|ref\|ZP_04788299.1\| copper-translocating P-type ATPase [Thermoanaerobacter brockii subsp... gi\|76588523, gi\|... - gi\|76796112\|ref\|ZP_00778480.1\| ATPase, E1-E2 type:Copper ion-binding:Copper-translocating P-type ATP... gi\|114844533, gi... - gi\|167039429\|ref\|YP_001662414.1\| copper-translocating P-type ATPase [Thermoanaerobacter sp. X514], g...	629.0	[0..3]	[752..72]
gi\|29374937, gi\|... - gi\|29374937\|ref\|NP_814090.1\| copper-translocating P-type ATPase [Enterococcus faecalis V583], gi\|293...	624.0	[0..2]	[752..72]
gi\|27262376 - gi\|27262376\|gb\|AAN87469.1\| Copper-importing ATPase [Heliobacillus mobilis]	620.0	[0..2]	[752..107]
gi\|66780411, gi\|... - gi\|94972060\|ref\|YP_594100.1\| heavy metal translocating P-type ATPase [Deinococcus geothermalis DSM 1...	618.0	[0..1]	[752..70]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQIKLYVAN MNCAGCVAKI EKAFAAESNV SARINLADKQ VTVDGKISPD AALAVMDKAG  60
   61 FPAQLIVDAK AAAEEKRIED AAEYKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	2g9oA
Description:	No description for 2g9oA was found.

Predicted Domain #2

Region A:
Residues: [87-753]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RMRQAVAALA VGIPMMLWGL LGGEMMINSP SMQLGWGIMG LITLALLIGT GRHFYQGMWR  60
   61 ALKAKTTNMD TLIVLGTSTA WLYSMVMVLI PSAFPMDTRH VYFEASVMIL GLINLGHALE 120
  121 LKARGKTSEA VQRLLGLQSS RAIRIGENGD EEVEISQLKL GDKLRLRPGD RVALDGVVES 180
  181 GQSLLDEAML TGEPIPVPKQ VGDSLSAGTV NGNGSLVYRV SAGQRDTRLA KIIALVQEAQ 240
  241 TSKMPIGRLA DNISAVFVPT VVVIALLAAA IWYLVGPEPA LSHALVVLTS VLIIACPCAL 300
  301 GLATPMSIMV SVGRAAQMGV LVKNGEALQS ASKVDCVVLD KTGTVTQGKP EVTDIHWHGE 360
  361 YEQALSADDK SALLGAIASL EQHSEHPLAN AIVSYVKQAS IPLPATEIFT NHQGKGIEGR 420
  421 VNYTDYLVGN QALMTAFKVP PLTVLANSNE TSELDATAHF AKQGKTPIYV AEAGKLVATI 480
  481 AIADPIKADA KEAISAIRSQ GIRVVLLTGD NPQTAQAVAE QVGIEEVIAG VLPEQKQQHI 540
  541 KALQQQGHVV AMVGDGINDA PALMSADVGI AMGSGTEVAI ESADMTLLSH QLIVIANLFA 600
  601 LSRATMTNIK QNLFGAFIYN SIGIPVAAGV LYPLTGMLLS PVIAGAAMAL SSLTVVTNAN 660
  661 RLRQQKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	1mhsA
Description:	Proton ATPase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits