YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373246, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	499 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373246, gi|....

Description	E-value	Query Range	Subject Range
gi\|52785994, gi\|... - gi\|52785994\|ref\|YP_091823.1\| DhaS [Bacillus licheniformis ATCC 14580], gi\|52348496\|gb\|AAU41130.1\| Dh...	575.0	[0..6]	[483..24]
gi\|20372798 - gi\|20372798\|emb\|CAD30313.1\| aldehyde dehydrogenase [Geobacillus stearothermophilus]	574.0	[0..6]	[479..21]
gi\|45523555, gi\|... - gi\|67925207\|ref\|ZP_00518574.1\| Aldehyde dehydrogenase (NAD+) [Crocosphaera watsonii WH 8501], gi\|678...	573.0	[0..5]	[480..16]
gi\|114624618, gi... - gi\|114624620\|ref\|XP_001170480.1\| PREDICTED: similar to aldehyde dehydrogenase (NAD) (EC 1.2.1.3) 5 p...	572.0	[0..6]	[485..38]
AL1A1_SHEEP - Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2	571.0	[0..3]	[485..19]
gi\|56961829, gi\|... - gi\|56961829\|ref\|YP_173551.1\| aldehyde dehydrogenase [Bacillus clausii KSM-K16], gi\|56908063\|dbj\|BAD6...	571.0	[0..6]	[481..25]
gi\|115899350, gi... - gi\|115931667\|ref\|XP_001178539.1\| PREDICTED: similar to aldehyde dehydrogenase 1A2 isoform 2 [Strongy...	570.0	[0..4]	[485..44]
AL1A1_CHICK - Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1	570.0	[0..3]	[485..27]
AL1A1_BOVIN - Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3	570.0	[0..3]	[485..19]
gi\|73971844 - gi\|73971844\|ref\|XP_538742.2\| PREDICTED: similar to aldehyde dehydrogenase 1B1 precursor [Canis famil...	569.0	[0..6]	[485..41]

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Predicted Domain #1

Region A:
Residues: [1-499]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTQVKHYID GEFTAGTGTS QIVVTNPANN ATIAVINSAT ADEVHAAIAS AKAAFKTWKE  60
   61 VPVSERARVM LRYQHLLKEH HDELATILAH ETGKTFEDAK GDVWRGIEVA EHACNIASLL 120
  121 MGETVENVAR SIDTYSYTQP LGVCAGITPF NFPAMIPLWM FPLAIACGNT FILKPSEQDP 180
  181 MTPQRLVELF VEAGAPKGVL QLIHGDKTAV DILLADPAVK AISFVGSVAV GQYIYKTGTD 240
  241 NLKRVQAFAG AKNHCVIMPD ANKQQVINNL VGASVGAAGQ RCMAISVAVF VGAAKEWIPE 300
  301 LKEALAKVRP GLWDDKDAGY GPLISPAAKV RVLKLIAQGK EEGAQCLLDG SDFTVAGFES 360
  361 GNWVGPTMFT KVTTDMSIYK EEIFGPVLCC MESDSLEDAI ELVNASPYGN GTSIFTASGA 420
  421 AARKYQHEIE VGQVGINVPI PVPLPFFSFT GWKGSFYGDQ HAYGKQAVRF YTETKTITAR 480
  481 WFESDIAVAA GPNMSINLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	141.0
Match:	1t90A
Description:	Crystal structure of methylmalonate semialdehyde dehydrogenase from Bacillus subtilis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits