YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347436, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	1158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347436, gi|....

Description	E-value	Query Range	Subject Range
gi\|209745712, gi... - pir\|\|B85503 DNA polymerase III, alpha subunit [imported] - Escherichia coli (strain O157:H7, substra... gi\|15799866, gi\|... - gi\|15799866\|ref\|NP_285878.1\| DNA polymerase III subunit alpha [Escherichia coli O157:H7 EDL933], gi\|... DPO3A_ECO57 - DNA polymerase III subunit alpha OS=Escherichia coli O157:H7 GN=dnaE PE=3 SV=1 gi\|13359642, gi\|... - gi\|15829440\|ref\|NP_308213.1\| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. Sakai],... gi\|217326041, gi... - gi\|217326041\|ref\|ZP_03442125.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. TW1... gi\|209159877, gi... - gi\|209398477\|ref\|YP_002268792.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC... gi\|208820436, gi... - gi\|208820436\|ref\|ZP_03260756.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4... gi\|208734037, gi... - gi\|208812760\|ref\|ZP_03254089.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4... gi\|168782076, gi... - gi\|189000426\|gb\|EDU69412.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4076]... gi\|187767109, gi... - gi\|187767109\|gb\|EDU30953.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4196]... gi\|189361079, gi... - gi\|189361079\|gb\|EDU79498.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4486]... gi\|168764953, gi... - gi\|189365137\|gb\|EDU83553.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4501]... gi\|208806614, gi... - gi\|208806614\|ref\|ZP_03248951.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4... gi\|195939880 - gi\|195939880\|ref\|ZP_03085262.1\| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. EC40... gi\|189375552, gi... - gi\|189375552\|gb\|EDU93968.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC508],... gi\|168789293, gi... - gi\|189371108\|gb\|EDU89524.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC869],... gi\|168758707, gi... - gi\|189354514\|gb\|EDU72933.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4401]... gi\|188013925, gi... - gi\|188013925\|gb\|EDU52047.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4113]... gi\|254590717, gi... - gi\|254791317\|ref\|YP_003076154.1\| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. TW1...	1534.0	[0..1]	[1157..1]
EG10238 - DNA polymerase III alpha subunit / DNA polymerase III, alpha subunit; suppressor of dnaG-Ts gi\|188493055, gi... - gi\|75512196\|ref\|ZP_00734768.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli 53638], ... gi\|193063148, gi... - gi\|75258825\|ref\|ZP_00730215.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli E22], gi... gi\|169887655, gi... - gi\|170079820\|ref\|YP_001729140.1\| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr... gi\|157158983, gi... - gi\|75189279\|ref\|ZP_00702546.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli E24377A]... gi\|209917374, gi... - gi\|209917374\|ref\|YP_002291458.1\| DNA polymerase III subunit alpha [Escherichia coli SE11], gi\|209910... gi\|218552765, gi... - gi\|218552765\|ref\|YP_002385678.1\| DNA polymerase III subunit alpha [Escherichia coli IAI1], gi\|218359... gi\|238860829, gi... - gi\|238899582\|ref\|YP_002925378.1\| DNA polymerase III alpha subunit [Escherichia coli BW2952], gi\|2388... gi\|89107064, gi\|... - gi\|89107064\|ref\|AP_000844.1\| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr. W3... gi\|218693649, gi... - gi\|218693649\|ref\|YP_002401316.1\| DNA polymerase III subunit alpha [Escherichia coli 55989], gi\|21835... DP3A_ECOLI, DPO3... - DNA polymerase III subunit alpha (EC 2.7.7.7) - Escherichia coli, (P10443) DNA polymerase III alpha ... EG10238 - DNA polymerase III alpha subunit / DNA polymerase III, alpha subunit; suppressor of dnaG-Ts	1533.0	[0..1]	[1157..1]
gi\|251783742, gi... - gi\|251783742\|ref\|YP_002998046.1\| hypothetical protein B21_00181 [Escherichia coli BL21], gi\|24237601... gi\|75229832, gi\|... - gi\|75229832\|ref\|ZP_00716359.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli B7A], gi... gi\|254160303, gi... - gi\|254160303\|ref\|YP_003043411.1\| DNA polymerase III subunit alpha [Escherichia coli B str. REL606], ... gi\|157159649, gi... - gi\|75194394\|ref\|ZP_00704464.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli HS], gi\|... gi\|254287106, gi... - gi\|254287106\|ref\|YP_003052854.1\| DNA polymerase III subunit alpha [Escherichia coli BL21(DE3)], gi\|2... gi\|194421163, gi... - gi\|83584721\|ref\|ZP_00923385.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli 101-1], ...	1533.0	[0..1]	[1157..1]
gi\|91070828, gi\|... - gi\|91209254\|ref\|YP_539240.1\| DNA polymerase III subunit alpha [Escherichia coli UTI89], gi\|91070828\|... gi\|115511593, gi... - gi\|117622469\|ref\|YP_851382.1\| DNA polymerase III subunit alpha [Escherichia coli APEC O1], gi\|115511... gi\|75240227, gi\|... - gi\|75240227\|ref\|ZP_00724174.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli F11], gi... gi\|226902255, gi... - gi\|237704343\|ref\|ZP_04534824.1\| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA], gi\|226... gi\|218363894, gi... - gi\|218557125\|ref\|YP_002390038.1\| DNA polymerase III subunit alpha [Escherichia coli S88], gi\|2183638...	1533.0	[0..1]	[1157..1]
gi\|110341995, gi... - gi\|110640403\|ref\|YP_668131.1\| DNA polymerase III subunit alpha [Escherichia coli 536], gi\|110341995\|...	1533.0	[0..1]	[1157..1]
gi\|73854281, gi\|... - gi\|74310804\|ref\|YP_309223.1\| DNA polymerase III subunit alpha [Shigella sonnei Ss046], gi\|73854281\|g...	1532.0	[0..1]	[1157..1]
gi\|194435013, gi... - gi\|83568988\|ref\|ZP_00920452.1\| COG0587: DNA polymerase III, alpha subunit [Shigella dysenteriae 1012...	1532.0	[0..1]	[1157..1]
gi\|192959133, gi... - gi\|75238887\|ref\|ZP_00722869.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli E110019]...	1532.0	[0..1]	[1157..1]
DPO3A_ECOL6 - DNA polymerase III subunit alpha OS=Escherichia coli O6 GN=dnaE PE=3 SV=1 DPO3A_ECOL6 - DNA polymerase III subunit alpha OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=d... gi\|227884903, gi... - gi\|227884903\|ref\|ZP_04002708.1\| DNA polymerase III subunit alpha [Escherichia coli 83972], gi\|227838...	1531.0	[0..1]	[1157..1]
gi\|81239722, gi\|... - gi\|82775574\|ref\|YP_401921.1\| DNA polymerase III subunit alpha [Shigella dysenteriae Sd197], gi\|81239...	1531.0	[0..1]	[1157..1]

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Predicted Domain #1

Region A:
Residues: [1-1158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDPRFVHLR VHSDFSMSDG VAKVKPILAQ VEAKGMAAVA LTDQNNLCGL VKFYGGCHGA  60
   61 GIKPIIGADF WMQVPGFEDE FCAVTIIAMD NEGYQNLTQI ISQAYLRGQV QGRVVIDQEW 120
  121 LITYNPGILL LSGGKEGDIG KALLKGNNTQ VESLCEFYQQ HFEGRYFLEL LRTGRPDEER 180
  181 YLHMAVGVAQ EKGIPVVATN QVVFLKPEDF EAHEIRVAIH DGFTLADPRR PKKYSEQQYL 240
  241 RSEDEMCELF ADIPAALANT VEIAKRCNVT IRLNEYFLPN FPTGDMSIED FLVDCSKKGL 300
  301 EERLAFLFPD PQVRAERRGE YDERLDVELK VINQMGFPGY FLIVMEFIQW GKDNGIPVGP 360
  361 GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMDR RDEVIDHVAE 420
  421 LYGREAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS KLIPPEPGMT LAKAFEVEPA 480
  481 LQESYDADED VKDLIDMCRK LEGVTRNAGK HAGGVVIAPT KITDFSPLYC DAEGKNPVTQ 540
  541 FDKNDVETAG LVKFDFLGLR TLTIVDWALE MINKVEVKNG RSPIRIEAIP LDDPASFRLL 600
  601 QRYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIERKHGREE 660
  661 VSYPDSQYQH ESLKELLSPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKPEEM 720
  721 AKQRSIFKEG AIKNGVDGEL SMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHFPP 780
  781 QFMAAVMSAD MDNTDKIVTL VDECERMGLT IIPPDVNKGL FKFTVDDDLR IVYGIGAIKG 840
  841 VGEGPVESIL EARKDGPFTD LFDFCARIDL KKLNKRVIEK LICAGALDAL GPHRASMMAT 900
  901 LPEAISAADQ HAKAEAIGQH DMFGLLNSDP EDSKQQFVEC TPWPDKIWLE GERETLGLYL 960
  961 TGHPINQYLK ELKHYTSGRL KDVHPTDRGK TVKAAGLVVA TRVMLTKRGS KMGLLTLDDK1020
 1021 SARLEVMLFT EAFEKFNHLL EKDRILICEG EVSFDDFAGG NRMTARNIID ISEARSHFAS1080
 1081 ALEIDLEASQ LTPSMLDSIE QAISPWRNGA VPVLINYSQA QAKGQFRLAE AWRVNPSDEL1140
 1141 VFALESLLGP HKVRIVFP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2hpiA
Description:	No description for 2hpiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits