YRC Public Data Repository - Protein Structure Prediction

Protein:	DAPD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPD_SHEON.

Description	E-value	Query Range	Subject Range
gi\|1574480 - gi\|1574480\|gb\|AAC23279.1\| 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (dapD) [Hae... gi\|1075340 - gi\|1075340\|pir\|\|H64133 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1....	221.0	[0..1]	[274..29]
gi\|68057975, gi\|... - gi\|68249776\|ref\|YP_248888.1\| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [Hae...	219.0	[0..1]	[274..23]
gi\|145271550, gi... - gi\|145639247\|ref\|ZP_01794853.1\| 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [Haem... gi\|145633035, gi... - gi\|145633035\|ref\|ZP_01788767.1\| 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [Haem... gi\|46133365 - gi\|46133365\|ref\|ZP_00157070.2\| COG2171: Tetrahydrodipicolinate N-succinyltransferase [Haemophilus in...	218.0	[0..1]	[274..1]
gi\|145267689, gi... - gi\|145635081\|ref\|ZP_01790787.1\| phosphoenolpyruvate carboxylase [Haemophilus influenzae PittAA], gi\|... DAPD_HAEIN - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase OS=Haemophilus influenzae (strain... gi\|53732876 - gi\|53732876\|ref\|ZP_00155204.2\| COG2171: Tetrahydrodipicolinate N-succinyltransferase [Haemophilus in... DAPD_HAEIN - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase OS=Haemophilus influenzae GN=dapD... gi\|229811265, gi... - gi\|229846261\|ref\|ZP_04466373.1\| 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [Haem... DAPD_HAEIE - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase OS=Haemophilus influenzae (strain... gi\|145637521, gi... - gi\|145637521\|ref\|ZP_01793179.1\| 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [Haem...	217.0	[0..1]	[274..1]
DAPD_MANSM - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase OS=Mannheimia succiniciproducens ...	216.0	[0..1]	[274..1]
DAPD_ACTSZ - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase OS=Actinobacillus succinogenes (s...	216.0	[0..1]	[274..1]
gi\|190151220, gi... - gi\|190151220\|ref\|YP_001969745.1\| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase... gi\|46143754 - gi\|46143754\|ref\|ZP_00134477.2\| COG2171: Tetrahydrodipicolinate N-succinyltransferase [Actinobacillus... DAPD_ACTP2 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase OS=Actinobacillus pleuropneumonia...	216.0	[0..3]	[274..2]
DAPD_ACTPL - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase OS=Actinobacillus pleuropneumonia...	214.0	[0..3]	[274..2]
DAPD_SHIDS - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase OS=Shigella dysenteriae serotype ...	210.0	[0..1]	[274..1]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALRQRIEA AFEARTDITP STVDERVRSD VQHVINMLDK GELRVAEKID GLWHVHQWLK  60
   61 KAVLLSFRIF DNAVIDGAET KYFDKVPLKF AEYDEARFKA EAIRVVPSAT VRKGSFIGKN 120
  121 TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED 180
  181 NCFIGARSEI VEGVVVEEGS VISMGVYIGQ STRIYDRETG EVHYGRVPAG SVVVSGNLPS 240
  241 ACGKYSLYAA IIVKKVDAKT RSKVGINELL RIVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.154902
Match:	1kgqA
Description:	Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.22811944286398	bayes_pls_golite062009
O-acyltransferase activity	1.64247384742412	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.61334532879528	bayes_pls_golite062009
acyltransferase activity	1.61097318205269	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.61041958820284	bayes_pls_golite062009
transferase activity	1.1230560089123	bayes_pls_golite062009
O-acetyltransferase activity	0.289124788848623	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: