YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373192, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373192, gi|....

Description	E-value	Query Range	Subject Range
gi\|68346410, gi\|... - gi\|70732111\|ref\|YP_261867.1\| formyltetrahydrofolate deformylase [Pseudomonas fluorescens Pf-5], gi\|6...	316.0	[0..2]	[271..20]
gi\|83360838, gi\|... - gi\|83369484\|ref\|ZP_00914338.1\| Formyltetrahydrofolate deformylase [Rhodobacter sphaeroides ATCC 1702...	315.0	[0..2]	[271..8]
gi\|25286210 - pir\|\|D87699 formyltetrahydrofolate deformylase [imported] - Caulobacter crescentus gi\|16127860, gi\|... - gi\|16127860\|ref\|NP_422424.1\| formyltetrahydrofolate deformylase [Caulobacter crescentus CB15], gi\|13... gi\|220965854, gi... - gi\|221236681\|ref\|YP_002519118.1\| formyltetrahydrofolate deformylase [Caulobacter crescentus NA1000],...	315.0	[0..2]	[271..5]
gi\|29607500, gi\|... - gi\|29830389\|ref\|NP_825023.1\| formyltetrahydrofolate deformylase [Streptomyces avermitilis MA-4680], ...	314.0	[0..2]	[271..19]
gi\|77460657, gi\|... - gi\|77460657\|ref\|YP_350164.1\| formyltetrahydrofolate deformylase [Pseudomonas fluorescens Pf0-1], gi\|...	312.0	[0..2]	[271..8]
gi\|83723946, gi\|... - gi\|83749369\|ref\|ZP_00946364.1\| Formyltetrahydrofolate deformylase [Ralstonia solanacearum UW551], gi...	312.0	[0..2]	[271..37]
gi\|32141235, gi\|... - gi\|32141235\|ref\|NP_733636.1\| formyltetrahydrofolate deformylase [Streptomyces coelicolor A3(2)], gi\|...	312.0	[0..2]	[271..23]
gi\|77868278, gi\|... - gi\|77952721\|ref\|ZP_00817134.1\| Formyltetrahydrofolate deformylase [Marinobacter aquaeolei VT8], gi\|7...	311.0	[0..2]	[271..9]
gi\|110594248, gi... - gi\|110594248\|ref\|ZP_01382595.1\| formyltetrahydrofolate deformylase [Acidovorax sp. JS42], gi\|1103364...	310.0	[0..2]	[271..128]
gi\|17546592 - gi\|17546592\|ref\|NP_519994.1\| formyltetrahydrofolate deformylase [Ralstonia solanacearum GMI1000] gi\|17428891 - gi\|17428891\|emb\|CAD15575.1\| probable formyltetrahydrofolate deformylase protein [Ralstonia solanacea...	310.0	[0..2]	[271..10]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDCADAQGL IAKITGVCFN HQLNIIKNSE FVDNAQGRFF MRTELEGHFH CEQLLQDLRQ  60
   61 VLPAQNHMTL VSAGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.522879
Match:	1zpvA
Description:	ACT domain protein from Streptococcus pneumoniae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	1.82494854621265	bayes_pls_golite062009
catalytic activity	1.01569611874813	bayes_pls_golite062009
transferase activity	0.07375530569672	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [76-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRIVILVTKE AHCLGDLLMK AYYGGLNVEI AAVVGNHDVL RELVEKFDIP FHLVSHEGLD  60
   61 RIQHEQALLA AVSQYSPDYL VLAKYMRVLT PDFVAEYPNR ILNIHHSFLP AFIGAAPYRQ 120
  121 AWERGVKIIG ATAHFVNNCL DEGPIIKQDV IPVDHSYSAL EMAKAGRDVE KSVLSKALQL 180
  181 VLNEQVVVYG NKTIVF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	1zlxA
Description:	The apo structure of human glycinamide ribonucleotide transformylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydroxymethyl-, formyl- and related transferase activity	4.30911230869939	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	3.93829204810029	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	3.16061609458624	bayes_pls_golite062009
catalytic activity	2.53047786804923	bayes_pls_golite062009
methyltransferase activity	1.49959796419617	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.49630496597474	bayes_pls_golite062009
transferase activity	1.21569993951472	bayes_pls_golite062009
formyltetrahydrofolate deformylase activity	0.85803295611657	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	0.27296524587077	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: