YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347166, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	836 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347166, gi|....

Description	E-value	Query Range	Subject Range
gi\|145563422, gi... - gi\|77813238\|ref\|ZP_00812516.1\| Twin-arginine translocation pathway signal [Shewanella putrefaciens C...	661.0	[0..1]	[836..1]
gi\|46915431, gi\|... - gi\|54302010\|ref\|YP_132003.1\| putative anaerobic dimethyl sulfoxide reductase, subunit A [Photobacter...	633.0	[0..1]	[836..13]
gi\|90327661, gi\|... - gi\|90411448\|ref\|ZP_01219459.1\| putative anaerobic dimethyl sulfoxide reductase, subunit A [Photobact...	631.0	[0..1]	[836..13]
gi\|227838891, gi... - gi\|227884139\|ref\|ZP_04001944.1\| anaerobic dimethyl sulfoxide reductase chain A precursor [Escherichi... gi\|218688737, gi... - gi\|218688737\|ref\|YP_002396949.1\| dimethyl sulfoxide reductase, anaerobic, subunit A [Escherichia col... gi\|26107320, gi\|... - gi\|26246920\|ref\|NP_752960.1\| anaerobic dimethyl sulfoxide reductase chain A precursor [Escherichia c...	627.0	[0..1]	[835..14]
gi\|91209997, gi\|... - gi\|91209997\|ref\|YP_539983.1\| anaerobic dimethyl sulfoxide reductase chain A precursor [Escherichia c... gi\|117623078, gi... - gi\|117623078\|ref\|YP_851991.1\| anaerobic dimethyl sulfoxide reductase chain A precursor [Escherichia ... gi\|218557802, gi... - gi\|218557802\|ref\|YP_002390715.1\| dimethyl sulfoxide reductase, anaerobic, subunit A [Escherichia col... gi\|226898326, gi... - gi\|237707116\|ref\|ZP_04537597.1\| anaerobic dimethyl sulfoxide reductase chain A [Escherichia sp. 3_2_...	627.0	[0..1]	[835..14]
gi\|75240971, gi\|... - gi\|75240971\|ref\|ZP_00724860.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin... gi\|110342686, gi... - gi\|110641094\|ref\|YP_668824.1\| anaerobic dimethyl sulfoxide reductase chain A precursor [Escherichia ...	627.0	[0..1]	[835..14]
gi\|114564836, gi... - gi\|69950243\|ref\|ZP_00638142.1\| Twin-arginine translocation pathway signal [Shewanella frigidimarina ...	627.0	[0..1]	[836..1]
gi\|167994706, gi... - gi\|205327461\|gb\|EDZ14225.1\| anaerobic dimethyl sulfoxide reductase chain a [Salmonella enterica subs... gi\|168230858, gi... - gi\|205334747\|gb\|EDZ21511.1\| anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family [Sal... gi\|204929995, gi... - gi\|204929995\|ref\|ZP_03221016.1\| anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family ... gi\|197262865, gi... - gi\|197262865\|ref\|ZP_03162939.1\| anaerobic dimethyl sulfoxide reductase chain a [Salmonella enterica ... gi\|16419476, gi\|... - gi\|16764325\|ref\|NP_459940.1\| anaerobic dimethyl sulfoxide reductase subunit A [Salmonella typhimuriu... gi\|200389506, gi... - gi\|200389506\|ref\|ZP_03216117.1\| anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family ... gi\|194469590, gi... - gi\|194469590\|ref\|ZP_03075574.1\| anaerobic dimethyl sulfoxide reductase chain a [Salmonella enterica ... gi\|197247690, gi... - gi\|197247690\|ref\|YP_002145882.1\| anaerobic dimethyl sulfoxide reductase chain a [Salmonella enterica... gi\|238913261 - gi\|238913261\|ref\|ZP_04657098.1\| anaerobic dimethyl sulfoxide reductase chain a [Salmonella enterica ... gi\|168263550, gi... - gi\|205347797\|gb\|EDZ34428.1\| anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family [Sal... gi\|168466549, gi... - gi\|195630951\|gb\|EDX49537.1\| anaerobic dimethyl sulfoxide reductase chain a [Salmonella enterica subs... lcl\|NC_016856.1_... - [gene=dmsA] [protein=anaerobic dimethyl sulfoxide reductase subunit A] [protein_id=YP_005236679.1] [...	626.0	[0..1]	[836..14]
gi\|224582774, gi... - gi\|224582774\|ref\|YP_002636572.1\| anaerobic dimethyl sulfoxide reductase chain A precursor [Salmonell... gi\|62127121, gi\|... - gi\|62179488\|ref\|YP_215905.1\| anaerobic dimethyl sulfoxide reductase, subunit A [Salmonella enterica ... gi\|207856356, gi... - gi\|207856356\|ref\|YP_002243007.1\| anaerobic dimethyl sulfoxide reductase chain A precursor [Salmonell... gi\|197938809, gi... - gi\|198244293\|ref\|YP_002214888.1\| anaerobic dimethyl sulfoxide reductase chain a [Salmonella enterica...	626.0	[0..1]	[836..14]
gi\|192955937, gi... - gi\|75234423\|ref\|ZP_00718784.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin...	625.0	[0..1]	[835..14]

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Predicted Domain #1

Region A:
Residues: [1-836]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERRSFLKMS AAMGCAATVT GCNSGSSDVN VVPPKPPVGD EVQTWSSCLV NCGSNCPIKV  60
   61 FSRDGIITRI ETDHETNDEY GNHQIRACAR GRSLRSRTYA PDRLRTPMKR VGKRGEAKFV 120
  121 PISWDEAAST IASEIQRIAS SYGNKSILKH YGTGAYYGFA SSACFDRVLN LNGGFLKIYG 180
  181 NYSWAQQNEA AAATGFASTS GSSLTALYDS DLFLGIGYNP SEMRQSGSGE GYDFLKALEA 240
  241 NANLEVIMVD PRYTDSMAGK ESQWLPIRPG TDAAFAEAIA YEMISSGWVD THSKAFLDKY 300
  301 CVGFDKASLE KLVAEFTASG DPKKTQYLPY IDVEDNYRNY ILGEGKFADN GPRTPAWAAK 360
  361 ICGISEANIK SVASKIMNAK APFIVTGAGV NRHANGEQAM RACYMLSFLT GKVGQPGVSN 420
  421 GALPYQGSLN RAGMSGGSNP VKESISFFTW AEAIERGHEM TARKDGIRGT ADLDTPLGAD 480
  481 IKAVFAINSN ALINQHSDCN GTAKILEDDT KCELIVVCDC WMTASARYAD ILLPDTTWLE 540
  541 SNDLVNDSYA SGIMGYLVAM KAAVKPMWES ISMFEMGRLI AAKMGKEAEY TEGKDEAAWL 600
  601 EELYQKTRTN SANTDAQPAF PNSYAEAQKI GVFRAFSKTP VLALDSYING GKAVSTPSGK 660
  661 VEIYSLSMAQ KGKDWIFNPN VKGDYITAIP MYQPTWEGYD DEDTKDDYPL QLMGYHTKGR 720
  721 THSSYHNVPW LREAAEDAVW MNPADALGRG LRGGDKVQMW NDRGTVELPV RITPRVAPGV 780
  781 VALGQGAWYQ PDIARIGRSG HPIDVGGCIN TLTRYQPSPF AKGNPQHTNR VQIVKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	137.0
Match:	1e60A
Description:	Dimethylsulfoxide reductase (DMSO reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
formate dehydrogenase activity	12.8557183783781	bayes_pls_golite062009
trimethylamine-N-oxide reductase activity	8.75612712598998	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.57161550681607	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	7.16311737169172	bayes_pls_golite062009
4 iron, 4 sulfur cluster binding	6.81363258746891	bayes_pls_golite062009
oxidoreductase activity	6.1435623144578	bayes_pls_golite062009
metal cluster binding	5.7442724322527	bayes_pls_golite062009
iron-sulfur cluster binding	5.7442724322527	bayes_pls_golite062009
molybdenum ion binding	3.31971125919934	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor	2.54554723799271	bayes_pls_golite062009
electron carrier activity	2.49660481239302	bayes_pls_golite062009
nitrate reductase activity	2.20600951698793	bayes_pls_golite062009
catalytic activity	1.93875927205186	bayes_pls_golite062009
carbon-carbon lyase activity	1.29705810885029	bayes_pls_golite062009
carboxy-lyase activity	1.27093915206504	bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors	1.12492792673137	bayes_pls_golite062009
lyase activity	0.603656450860878	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.134493772161849	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: